Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120272.Seq
         (840 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81113-5|CAB03282.3|  404|Caenorhabditis elegans Hypothetical pr...    30   2.4  
AF164430-1|AAF82632.1|  404|Caenorhabditis elegans LIS-1 protein.      30   2.4  
Z81544-6|CAI46607.1|  376|Caenorhabditis elegans Hypothetical pr...    29   5.4  
Z75543-2|CAA99870.1|  529|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z70213-9|CAA94177.1| 1520|Caenorhabditis elegans Hypothetical pr...    28   9.5  
Z49069-5|CAA88867.1| 1520|Caenorhabditis elegans Hypothetical pr...    28   9.5  

>Z81113-5|CAB03282.3|  404|Caenorhabditis elegans Hypothetical
           protein T03F6.5 protein.
          Length = 404

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
 Frame = +2

Query: 167 VFVKKFNFASVLQ-ELNNIKSKIELYEAQV*L-AKTSDK*NKTDRVTSKPALKSSCSF*R 340
           +  KK+     LQ ++N+++SK++  + ++   A T DK    D +   P  +       
Sbjct: 48  ILEKKWTTVLRLQRKVNDLESKLQESQREINHGAPTRDKRQAADWIPRPPETQKLTGHRL 107

Query: 341 RLTKISSHTLWKTAFQATKCWTTSIWNMTT 430
            +T++  H LW      ++  T  +W+  T
Sbjct: 108 PITRVIFHPLWTIMASCSEDATIKVWDYET 137


>AF164430-1|AAF82632.1|  404|Caenorhabditis elegans LIS-1 protein.
          Length = 404

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
 Frame = +2

Query: 167 VFVKKFNFASVLQ-ELNNIKSKIELYEAQV*L-AKTSDK*NKTDRVTSKPALKSSCSF*R 340
           +  KK+     LQ ++N+++SK++  + ++   A T DK    D +   P  +       
Sbjct: 48  ILEKKWTTVLRLQRKVNDLESKLQESQREINHGAPTRDKRQAADWIPRPPETQKLTGHRL 107

Query: 341 RLTKISSHTLWKTAFQATKCWTTSIWNMTT 430
            +T++  H LW      ++  T  +W+  T
Sbjct: 108 PITRVIFHPLWTIMASCSEDATIKVWDYET 137


>Z81544-6|CAI46607.1|  376|Caenorhabditis elegans Hypothetical
           protein F49C5.9 protein.
          Length = 376

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 8   GVKLLGTCALIILLSTTNTVVGRDRITFTPIEDSAGLVFER 130
           G+ +LG CA+I  LS  N  V      F  ++     +F++
Sbjct: 164 GILILGNCAIIFKLSAQNDQVKMQNDVFEKVDPRCAEIFQK 204


>Z75543-2|CAA99870.1|  529|Caenorhabditis elegans Hypothetical
           protein K01D12.2 protein.
          Length = 529

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +1

Query: 370 VEDSISSNEVLDNIDLEYDDGVDFDVYDEYEPSSHWSNMTVSDAKACSKTRPKTE 534
           +E  ISSNE+ + ID+E  D    D  D+Y+  S   +  +   +  S TR   E
Sbjct: 403 METIISSNEIGNQIDVE--DSQQLDSKDQYQKVSELQDDFIETVETKSITRINNE 455


>Z70213-9|CAA94177.1| 1520|Caenorhabditis elegans Hypothetical protein
            K12D12.1 protein.
          Length = 1520

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +1

Query: 328  QFLTPLNKNFITYSVEDSISSNEVLDNIDLEYDDGVDFDVYDE 456
            +F++P           D  +S ++ +  D+E+D+G+DFD  D+
Sbjct: 1320 KFMSPAAPKTAKKEKSDGFNS-DMSEESDVEFDEGIDFDSDDD 1361


>Z49069-5|CAA88867.1| 1520|Caenorhabditis elegans Hypothetical protein
            K12D12.1 protein.
          Length = 1520

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +1

Query: 328  QFLTPLNKNFITYSVEDSISSNEVLDNIDLEYDDGVDFDVYDE 456
            +F++P           D  +S ++ +  D+E+D+G+DFD  D+
Sbjct: 1320 KFMSPAAPKTAKKEKSDGFNS-DMSEESDVEFDEGIDFDSDDD 1361


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,665,639
Number of Sequences: 27780
Number of extensions: 348639
Number of successful extensions: 1092
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)