Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120272.Seq
         (840 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.5  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    24   2.0  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   3.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   4.6  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   6.1  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +3

Query: 483  HDCIRRESLLQNPPKDRVMFLDTVTTNNVSSK 578
            HD +  + ++  PP    + L   TTN+++ K
Sbjct: 1354 HDTVTHQLIVHAPPHSPQITLTATTTNSLTMK 1385


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +2

Query: 155 DERF-VFVKKFNFASVLQELNNIKSKIELYEAQV*LAKTSDK*NKTDRVTSKPAL 316
           D RF   V K    SVL+E     +   L E +V LAKT  +  +++    K AL
Sbjct: 36  DARFETLVVKQTKQSVLEEARQRANDAGLTEEEVVLAKTIAECPESENTVQKAAL 90


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 7/15 (46%), Positives = 7/15 (46%)
 Frame = +2

Query: 374 KTAFQATKCWTTSIW 418
           K     T CW T IW
Sbjct: 48  KNQILTTNCWVTQIW 62


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 471  ALEQHDCIRRESLLQ 515
            +L+ HDCIR+E   Q
Sbjct: 1644 SLQDHDCIRQERTQQ 1658


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 623 KRVHVFSQHDERAQRQIRRR-SSFGQNAEANSKTNAKEQTPHFQHGY 760
           +R H F   D+R +++ +RR   +GQ     +   AK   P    GY
Sbjct: 170 RREHPFWD-DQRVEQEAKRRFEKYGQLFMEETLKAAKRMRPAANWGY 215


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,173
Number of Sequences: 438
Number of extensions: 4360
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)