Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120272.Seq
         (840 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61100.1 68414.m06883 disease resistance protein (TIR class),...    32   0.55 
At3g16890.1 68416.m02159 pentatricopeptide (PPR) repeat-containi...    29   5.1  
At5g34960.1 68418.m04125 hypothetical protein includes At5g34960...    28   6.7  
At1g19870.1 68414.m02492 calmodulin-binding family protein conta...    28   6.7  

>At1g61100.1 68414.m06883 disease resistance protein (TIR class),
           putative domain signature TIR exists, suggestive of a
           disease resistance protein.
          Length = 808

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +1

Query: 250 SLTCKNVRQIKQNRSSNIKTRIEKQLQFLTPLNKN 354
           S T KN R+ K+NR  + KT I + + ++TP  +N
Sbjct: 376 SRTSKNSRRSKKNRKKSSKTVIIRNINYITPEGRN 410


>At3g16890.1 68416.m02159 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 659

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 579 YEEYIDCIVSNRTVENECMFLANMMN 656
           Y   IDC+   R +EN  MFL  M +
Sbjct: 428 YNAVIDCLCKARRIENAAMFLTEMQD 453


>At5g34960.1 68418.m04125 hypothetical protein includes At5g34960,
           At2g14450, At1g35920
          Length = 1033

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = +1

Query: 268 VRQIKQNRSSNIKTRIEKQLQFLTPLNKNFITYSVEDSISSNEVLDNIDL 417
           V +++ NR SN+K + E+  Q LTP  +  +   + +++ +N  LD I L
Sbjct: 627 VEELRYNRESNLKEKHEEWKQMLTPEQRG-VYNEITEAVFNN--LDQIVL 673


>At1g19870.1 68414.m02492 calmodulin-binding family protein contains
           Pfam profile: PF00612 IQ calmodulin-binding motif
          Length = 794

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 641 SQHDERAQRQIRRRSSFGQNAEANSKTNAKEQTPHF 748
           ++ +E  +++  RR+SFG + EA   +  K   P F
Sbjct: 691 TEQEEGKEQKSGRRTSFGYDQEARESSGGKNSLPRF 726


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,208,821
Number of Sequences: 28952
Number of extensions: 302128
Number of successful extensions: 928
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)