Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120271.Seq
         (784 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY553965-1|AAS90559.1|  748|Drosophila melanogaster thisbe protein.    29   7.2  
AE013599-1345|AAF58621.2|  748|Drosophila melanogaster CG12443-P...    29   7.2  

>AY553965-1|AAS90559.1|  748|Drosophila melanogaster thisbe protein.
          Length = 748

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = -1

Query: 703 NINFRMSKNQNKCGYKIGSPPPAGSKNDVFKFRSVN-NIVIAPAKTGSDNNNKNAVIPTA 527
           N N   S N N  G      PP  +KN+  K  + N  +       G +NNN N ++  +
Sbjct: 165 NNNGNGSGNDNGNGSNNSRKPPRNNKNNRHKSNNQNQKLQQQQEHHGHNNNNNNVILNNS 224

Query: 526 HTN 518
           +T+
Sbjct: 225 NTS 227


>AE013599-1345|AAF58621.2|  748|Drosophila melanogaster CG12443-PA
           protein.
          Length = 748

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = -1

Query: 703 NINFRMSKNQNKCGYKIGSPPPAGSKNDVFKFRSVN-NIVIAPAKTGSDNNNKNAVIPTA 527
           N N   S N N  G      PP  +KN+  K  + N  +       G +NNN N ++  +
Sbjct: 165 NNNGNGSGNDNGNGSNNSRKPPRNNKNNRHKSNNQNQKLQQQQEHHGHNNNNNNVILNNS 224

Query: 526 HTN 518
           +T+
Sbjct: 225 NTS 227


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,164,444
Number of Sequences: 53049
Number of extensions: 516252
Number of successful extensions: 1026
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3613676352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)