Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120268.Seq
         (833 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    28   1.9  
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch...    27   4.3  
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch...    26   7.6  

>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 418 RNTKARQVCIATSPLNISEASISKQSEPAKK 510
           +N+K+R V + +SP N+   ++S   +  KK
Sbjct: 561 KNSKSRNVSVFSSPFNVPSFTVSSSDQVQKK 591


>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 374 FKWLDILTTRWQRYNNTTHLIFSCLFNF 291
           F W+D L     R++ +T +  SC+F F
Sbjct: 135 FPWMDKLAASSSRFSLSTSITHSCVFMF 162


>SPBC9B6.11c |||CCR4/nocturin family
           endoribonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 502

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 333 IPLPSCSQDVQPLENRCSNDKAIQVAPAQ 419
           +PLPS  ++ +PLE R  +D    +A  Q
Sbjct: 472 VPLPSEMKEAEPLEGRYPSDHVALMANVQ 500


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,282,411
Number of Sequences: 5004
Number of extensions: 65481
Number of successful extensions: 154
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)