Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120268.Seq
         (833 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19774| Best HMM Match : WWE (HMM E-Value=5.4e-24)                   29   3.5  
SB_3877| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.1  

>SB_19774| Best HMM Match : WWE (HMM E-Value=5.4e-24)
          Length = 729

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -1

Query: 332 NNTTHLIFSCLFNFLDNSESLPF-HKC 255
           N  TH++F+CL+N +++S  +   HKC
Sbjct: 192 NAFTHVLFACLYNIMNSSVGVAVRHKC 218


>SB_3877| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 344 WQRYNNTTHLIFSCLFNFLDNSESLPFHKCG 252
           WQ   N  +LI +  +  L N   LP+HKCG
Sbjct: 2   WQVITNVAYLITNVAY--LINECGLPYHKCG 30


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,172,520
Number of Sequences: 59808
Number of extensions: 439164
Number of successful extensions: 885
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2347493764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)