Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120268.Seq
         (833 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    26   0.49 
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    24   2.0  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    24   2.0  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    24   2.0  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   2.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   8.0  

>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 25.8 bits (54), Expect = 0.49
 Identities = 11/45 (24%), Positives = 19/45 (42%)
 Frame = +1

Query: 112 LENYMENYMQYKIMSSIK*IRMKPNCLPSKFDCRADRKRKFTHSE 246
           ++ YM    Q   +     + M+P C+  ++ C   RK K    E
Sbjct: 28  IDMYMRRKCQECRLKKCLTVGMRPECMVPEYQCAVKRKEKKAQKE 72


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -1

Query: 788 LVQKHLYVLIKPIMKHNSCGRPIYKRCLFFTLDK 687
           L+    Y L  P+     CG     RCL +T+DK
Sbjct: 118 LIDTKCYKLEHPV---TGCGERTEGRCLHYTVDK 148


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -1

Query: 788 LVQKHLYVLIKPIMKHNSCGRPIYKRCLFFTLDK 687
           L+    Y L  P+     CG     RCL +T+DK
Sbjct: 123 LIDTKCYKLEHPV---TGCGERTEGRCLHYTVDK 153


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -1

Query: 788 LVQKHLYVLIKPIMKHNSCGRPIYKRCLFFTLDK 687
           L+    Y L  P+     CG     RCL +T+DK
Sbjct: 123 LIDTKCYKLEHPV---TGCGERTEGRCLHYTVDK 153


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/45 (22%), Positives = 19/45 (42%)
 Frame = +1

Query: 112 LENYMENYMQYKIMSSIK*IRMKPNCLPSKFDCRADRKRKFTHSE 246
           ++ YM    Q   +     + M+P C+  ++ C   RK +    E
Sbjct: 231 IDMYMRRKCQECRLKKCLTVGMRPECVVPEYQCAVKRKEEKAQKE 275


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 6/29 (20%), Positives = 14/29 (48%)
 Frame = -1

Query: 389 ITTPIFKWLDILTTRWQRYNNTTHLIFSC 303
           ++ P + W + L  +W      + ++F C
Sbjct: 257 LSHPTYDWFEKLELKWFAVPAVSGMVFDC 285


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,418
Number of Sequences: 438
Number of extensions: 4559
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)