Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120267.Seq
         (729 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          25   0.63 
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           25   0.63 
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    23   1.9  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   4.4  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       22   5.8  

>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
 Frame = +1

Query: 442 TCRRHYHLHCLRPPLTRPPKKSNCTDGN----VRSVIKHPT 552
           T   +Y  +   PP+T PP   NC   N    + SV++ PT
Sbjct: 31  TTYEYYENNQALPPITYPPSDWNCPQYNAPPYMSSVLQLPT 71


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
 Frame = +1

Query: 442 TCRRHYHLHCLRPPLTRPPKKSNCTDGN----VRSVIKHPT 552
           T   +Y  +   PP+T PP   NC   N    + SV++ PT
Sbjct: 22  TTYEYYENNQALPPITYPPSDWNCPQYNAPPYMSSVLQLPT 62


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = -2

Query: 422 GRSLRPPHTAHAPHNDAEQHKKKHNH 345
           G  L  PH AH P      H    NH
Sbjct: 22  GAGLYEPHVAHRPGLQGLHHSPHLNH 47


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 513  YGWQCSECDKTSDSEPEC 566
            + W C++   TSDS  +C
Sbjct: 1039 FSWACNDAVMTSDSIMKC 1056


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 413 LRPPHTAHAPHNDAEQHKKKHNHL 342
           +RPP T    H  A ++ K H +L
Sbjct: 365 VRPPLTREEIHEKARENLKHHANL 388


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,968
Number of Sequences: 336
Number of extensions: 2638
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)