Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120267.Seq
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    36   0.006
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    32   0.096
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    32   0.096
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    31   0.13 
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    30   0.29 
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    27   2.7  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      26   6.3  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   8.4  
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   8.4  

>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 35.9 bits (79), Expect = 0.006
 Identities = 27/69 (39%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
 Frame = +1

Query: 436 CDTCRRHYHLHCLRPPLTRPPK--------KSNCTDGNVRSVIKHPTPNRSVRKERSSSF 591
           CD C   YH  CL PPLT  PK        K N +D + R   K      S  KERS+  
Sbjct: 286 CDGCEAAYHTSCLDPPLTSIPKEDWYCDACKFNISDYDPRKGFKW---KLSSLKERSAEI 342

Query: 592 PNTVQ*RRS 618
            NT+  R S
Sbjct: 343 FNTLGERNS 351


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 31.9 bits (69), Expect = 0.096
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 436 CDTCRRHYHLHCLRPPLTRPP 498
           C  C+++YH+ C+ PPL + P
Sbjct: 277 CADCKKYYHMDCVVPPLLKKP 297


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 31.9 bits (69), Expect = 0.096
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +1

Query: 433 ACDTCRRHYHLHCLRPPLTRPPKKSNCTDGNVRSVIKHPTP 555
           ACD C  ++H  CL PPL   P  SN       +   H TP
Sbjct: 424 ACDYCNSYWHPDCLNPPLATLP--SNLRKWKCPNHSDHVTP 462



 Score = 26.6 bits (56), Expect = 3.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 436 CDTCRRHYHLHCLRPPL 486
           C+TC   +H  C+ PP+
Sbjct: 278 CETCPNSFHFTCIDPPI 294


>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 418 RPLMAACDTCRRHYHLHCLRPPLT 489
           R L   C+ C   +HL CL PPLT
Sbjct: 126 RGLFICCEGCPCSFHLSCLEPPLT 149


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 19/51 (37%), Positives = 22/51 (43%)
 Frame = +1

Query: 436 CDTCRRHYHLHCLRPPLTRPPKKSNCTDGNVRSVIKHPTPNRSVRKERSSS 588
           C  C   +HL CL PP T     S     N + V KH T +   R ER  S
Sbjct: 58  CSVCLNMFHLSCLSPPCTSMMGFST----NYQFVCKHCTEDGFERFERGVS 104


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 620 IIADPQSPGTLRVSAVQVLGTIPQTGKAREK 712
           +  DP  P TLR+S    +G+     KA EK
Sbjct: 385 VCLDPSQPYTLRLSGAMYIGSYVARAKALEK 415


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 649 RAGTLRVGDDGSVFTVPYSGTTRTFLF*HSGSESDVL 539
           R  TL   D  S+++ PY+  T  F    + + SD+L
Sbjct: 216 RFQTLNSSDSASIYSSPYTSPTLEFSKKDASARSDIL 252


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -3

Query: 196 FRNFPVYYYCQYQMPYKITVTKVS 125
           F+ F V +YC++++  +  + KVS
Sbjct: 809 FQTFQVVFYCEFELGNQQNINKVS 832


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 608 YCTVFGNDEDLSFLTLRFGVGCFI 537
           +C ++G  + L      FG+GCF+
Sbjct: 147 FCDIYGRKKTLLAAYCVFGIGCFL 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,503,375
Number of Sequences: 5004
Number of extensions: 45605
Number of successful extensions: 148
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)