Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120267.Seq
(729 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 40 0.003
06_01_0609 + 4404287-4405023,4405496-4405631,4405724-4405876,440... 38 0.006
06_03_1511 - 30669292-30669401,30669894-30669930,30670012-306701... 37 0.019
02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,513... 35 0.058
01_06_1574 + 38337669-38338196 35 0.076
02_01_0688 + 5131555-5132334 33 0.23
08_01_0036 - 267236-268165,268255-268299,268485-268574,269485-26... 32 0.41
04_04_1104 - 30928475-30928501,30929008-30929110,30929287-309293... 31 0.71
02_01_0173 + 1190846-1191134,1191235-1191557,1191645-1191958,119... 31 1.2
01_05_0282 - 20347915-20348874,20348968-20349012,20349568-203498... 31 1.2
06_03_0743 + 24069752-24070483,24071890-24072345 30 2.2
07_03_1780 - 29465873-29466130,29466236-29466335,29466473-294665... 29 3.8
04_03_0948 - 21021021-21021040,21022743-21022818,21023167-210232... 29 5.0
03_02_0341 - 7643426-7643973,7644340-7644505 28 8.7
>07_03_0481 -
18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 39.5 bits (88), Expect = 0.003
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 427 MAACDTCRRHYHLHCLRPPLTR-PPKKSNC 513
+ CD+C R YHL CL PPL R PP C
Sbjct: 44 LLCCDSCPRTYHLECLNPPLKRAPPGNWQC 73
>06_01_0609 +
4404287-4405023,4405496-4405631,4405724-4405876,
4405985-4406128,4406224-4406375,4406453-4406552,
4406653-4406775,4406876-4407037,4407190-4407247,
4407324-4407502,4408294-4408402,4408567-4408637,
4408891-4408986,4409727-4409803,4410983-4411066,
4411473-4411607,4411744-4411819,4413072-4413167,
4413580-4413671,4413745-4413868,4413966-4414052
Length = 996
Score = 38.3 bits (85), Expect = 0.006
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Frame = +1
Query: 409 RSERPLMAACDTCRRHYHLHCLRPPLTRPPKKS----NCTDGNVRSVIKHPTPNRSVRKE 576
R+ +M CD C +HL C+RPPL R P+ C I+ P P R
Sbjct: 168 RAGAAVMVECDVCLGGFHLRCVRPPLRRVPEGDWACPYCEAERAGKAIERPKPPEGKRIV 227
Query: 577 RSS 585
R++
Sbjct: 228 RTA 230
>06_03_1511 -
30669292-30669401,30669894-30669930,30670012-30670107,
30670186-30670281,30670679-30670828,30670956-30671100,
30671178-30671251,30671325-30671445,30671697-30671821,
30671898-30672047,30672249-30672324,30672496-30672557,
30672597-30672839,30673354-30673683,30673776-30673932,
30674008-30674139,30674219-30674277,30674734-30674798,
30674878-30675094,30675413-30675499,30675655-30675750,
30675938-30676003,30676096-30676287,30676380-30676532,
30676812-30677052,30677322-30677515,30678212-30678348,
30678474-30678480,30678708-30678830,30679370-30679427,
30680018-30680090,30680493-30681765
Length = 1714
Score = 36.7 bits (81), Expect = 0.019
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +1
Query: 424 LMAACDTCRRHYHLHCLRPPL-TRPPKKSNCTD--GNVRSVIKHPTPNRSVRKERSSSFP 594
+M CD C + +HL+CL PPL + PP C++ + R+ ++ + E F
Sbjct: 270 VMLLCDRCDKGWHLYCLSPPLESVPPGNWYCSECMNSDRNCFGFVHRRKTCQVETFRKFE 329
Query: 595 NTVQ*RRSHHRRPA 636
V+ R H+ P+
Sbjct: 330 ERVRKRWFGHKNPS 343
>02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,
5139967-5140289,5141373-5142479,5142593-5143279,
5144214-5144522,5145488-5145823,5146165-5146263,
5146676-5146940,5146950-5147104,5147666-5149723,
5150168-5150367,5150662-5150718,5150965-5151079
Length = 1985
Score = 35.1 bits (77), Expect = 0.058
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 436 CDTCRRHYHLHCLRPPLTRPPK 501
CD C YH +CL PPL R P+
Sbjct: 1096 CDKCDSEYHTYCLNPPLARIPE 1117
>01_06_1574 + 38337669-38338196
Length = 175
Score = 34.7 bits (76), Expect = 0.076
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +1
Query: 436 CDTCRRHYHLHCLRPPLTRPPK 501
CD C YHL+CL PPLT P+
Sbjct: 89 CDGCDEGYHLYCLIPPLTLVPE 110
>02_01_0688 + 5131555-5132334
Length = 259
Score = 33.1 bits (72), Expect = 0.23
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Frame = +1
Query: 436 CDTCRRHYHLHCLR--PPLTRPP 498
CD+C R +HL C+R PPL PP
Sbjct: 146 CDSCERGFHLACVRVWPPLMPPP 168
>08_01_0036 - 267236-268165,268255-268299,268485-268574,269485-269805,
269895-270098,271532-271664,271810-271881,273106-273168,
273252-275034,275169-275217
Length = 1229
Score = 32.3 bits (70), Expect = 0.41
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +1
Query: 436 CDTCRRHYHLHCLRPPLTRPPK-KSNCTDGNVR 531
CD C YH++C+RP PK K CT +R
Sbjct: 1158 CDGCDEGYHIYCMRPARNTIPKGKWYCTFCKIR 1190
>04_04_1104 -
30928475-30928501,30929008-30929110,30929287-30929340,
30929803-30929895,30930063-30930140,30930416-30930527,
30930618-30930756,30930823-30930910,30930984-30931079,
30931675-30931781,30931874-30932009,30932089-30932186,
30932954-30933047,30933132-30933301,30933749-30933819,
30936066-30936194,30936552-30936654,30936764-30936907,
30937123-30937245,30937482-30937563,30939044-30939120,
30939261-30939315,30939365-30939443,30939544-30939620,
30939739-30939869,30939947-30940120,30940245-30940310,
30940937-30941572
Length = 1113
Score = 31.5 bits (68), Expect = 0.71
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 415 ERPLMAACDTCRRHYHLHCLRPPLT 489
E+ L+ C C RH H CL PP T
Sbjct: 650 EKTLLLHCSGCSRHVHPGCLTPPWT 674
>02_01_0173 +
1190846-1191134,1191235-1191557,1191645-1191958,
1192302-1192461
Length = 361
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 436 CDTCRRHYHLHCLRPPLTRPP 498
CD C R H+ CLRP L R P
Sbjct: 50 CDGCDRGLHIFCLRPILPRVP 70
>01_05_0282 -
20347915-20348874,20348968-20349012,20349568-20349816,
20350393-20350581,20351051-20351155,20351165-20351488,
20351493-20351555
Length = 644
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 424 LMAACDTCRRHYHLHCLRPPLTRPPK 501
L CD C YHL+C+ P T PK
Sbjct: 558 LTILCDGCDEAYHLYCITPRRTSIPK 583
>06_03_0743 + 24069752-24070483,24071890-24072345
Length = 395
Score = 29.9 bits (64), Expect = 2.2
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Frame = +1
Query: 448 RRHYHLHCLRPPLTRPPKKSNCTDGNVRSVIKHPTPNRS--VRKERS--SSFPNTVQ*RR 615
R H+ LH PP PP + G S + P P S +R+ S P+T
Sbjct: 17 RSHHPLHFPPPPPPPPPPYAASFSGLYSSYLHPPPPPSSPPIREALPLLSLTPSTTHDDD 76
Query: 616 SHHRRPAESRH 648
HHRR + H
Sbjct: 77 HHHRRHDQDHH 87
>07_03_1780 -
29465873-29466130,29466236-29466335,29466473-29466559,
29466682-29467000,29467097-29468567
Length = 744
Score = 29.1 bits (62), Expect = 3.8
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +1
Query: 424 LMAACDTCRRHYHLHCLR 477
++ +C+ CRR YH+ C+R
Sbjct: 480 MVISCEQCRREYHVGCMR 497
>04_03_0948 -
21021021-21021040,21022743-21022818,21023167-21023214,
21023655-21023745,21024524-21024636,21024718-21024778,
21025816-21026007,21026029-21026762
Length = 444
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +1
Query: 409 RSERPL-MAACDTCRRHYHLHCLRPPLTRPP 498
+S+ PL M CD+C +HL C P + P
Sbjct: 211 KSDHPLKMLICDSCEAAFHLSCCIPRVHEVP 241
>03_02_0341 - 7643426-7643973,7644340-7644505
Length = 237
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 436 CDTCRRHYHLHCLRPPLTRPPK 501
CD +H+H L PP+ PPK
Sbjct: 157 CDPFHKHHHHIVLHPPVIVPPK 178
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,341,665
Number of Sequences: 37544
Number of extensions: 309006
Number of successful extensions: 964
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -