Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120267.Seq
         (729 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    24   1.3  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   3.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.9  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   3.9  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   6.8  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   9.0  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   9.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   9.0  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -2

Query: 419 RSLRPPHTAHAPHNDAEQHKKKHNH 345
           RS  P      PH D  + K K+NH
Sbjct: 42  RSPSPSLLTSQPHQDHNKEKSKNNH 66


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 573 FSNTPVRSRMFYHTPNIAIRTVA 505
           F+N P +  MFY+  N  I++++
Sbjct: 520 FNNVPKKLNMFYNNFNSDIKSIS 542


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 419 RSLRPPHTAHAPHNDAEQHKKKHNHLYLTT*YYASPET 306
           R+LR   +A A      QH +   HL+LT+    SP +
Sbjct: 648 RALRQKDSAEAEPAVIVQHTQSQLHLHLTSPPARSPSS 685


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 573 FSNTPVRSRMFYHTPNIAIRTVA 505
           F+N P +  MFY+  N  I++++
Sbjct: 520 FNNVPKKLNMFYNNFNSDIKSIS 542


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = -3

Query: 682 CSEDLDGGDAERAGTLRVG-DDG 617
           C E    GD +R+   R+G DDG
Sbjct: 14  CDEQTSRGDNDRSRIARLGRDDG 36


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 334 PLNIMPLLKRFGGRTSE 284
           P  ++PLLK +G  T+E
Sbjct: 184 PFTVLPLLKVWGRYTTE 200


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +1

Query: 172 NNIQESFGNFRLIFECTY*ENESQ*FL 252
           NN+  ++  F+L+ +C +  +E   FL
Sbjct: 55  NNLLNAYVRFKLVTDCIFVTSEPGYFL 81


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 334 PLNIMPLLKRFGGRTSE 284
           P  ++PLLK +G  T+E
Sbjct: 184 PFTVLPLLKVWGRYTTE 200


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,836
Number of Sequences: 438
Number of extensions: 3439
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)