Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120267.Seq
(729 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG ... 37 0.016
At4g12620.1 68417.m01988 replication control protein, putative s... 36 0.028
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil... 36 0.036
At4g14700.1 68417.m02259 replication control protein, putative s... 35 0.064
At5g24330.1 68418.m02867 PHD finger family protein / SET domain-... 33 0.19
At5g09790.1 68418.m01133 PHD finger family protein / SET domain-... 32 0.34
At1g77250.1 68414.m08997 PHD finger family protein contains Pfam... 31 0.78
At5g39310.1 68418.m04760 expansin, putative (EXP24) similar to e... 29 4.2
At2g28630.1 68415.m03481 beta-ketoacyl-CoA synthase family protein 29 4.2
At3g29060.1 68416.m03635 EXS family protein / ERD1/XPR1/SYG1 fam... 28 5.5
At3g05545.1 68416.m00609 transcription factor, putative / zinc f... 28 5.5
At1g77480.2 68414.m09023 nucellin protein, putative similar to n... 28 5.5
At3g52100.1 68416.m05717 PHD finger family protein contains Pfam... 28 7.3
At3g20280.2 68416.m02570 PHD finger family protein contains Pfam... 28 7.3
At3g20280.1 68416.m02569 PHD finger family protein contains Pfam... 28 7.3
At3g08020.1 68416.m00979 PHD finger protein-related contains low... 28 7.3
At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKL... 28 7.3
At1g15020.2 68414.m01795 thioredoxin family protein low similari... 28 7.3
At1g15020.1 68414.m01794 thioredoxin family protein low similari... 28 7.3
At5g63900.1 68418.m08023 PHD finger family protein contains Pfam... 27 9.6
At4g29940.1 68417.m04259 pathogenesis-related homeodomain protei... 27 9.6
At3g26600.1 68416.m03320 armadillo/beta-catenin repeat family pr... 27 9.6
At3g20630.1 68416.m02610 ubiquitin-specific protease 14, putativ... 27 9.6
>At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG
binding domain-containing protein contains Pfam profiles
PF00628: PHD-finger (2 copies), PF01429: Methyl-CpG
binding domain
Length = 2176
Score = 36.7 bits (81), Expect = 0.016
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +1
Query: 436 CDTCRRHYHLHCLRPPLTRPP 498
CDTC YH +CL PPL R P
Sbjct: 1305 CDTCDAEYHTYCLNPPLIRIP 1325
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Frame = +1
Query: 424 LMAACDTCRRHYHLHCLRPPLTRPPKK----SNCTDGNVRS 534
L+ CD C R +H+ C+ + P S+C G RS
Sbjct: 97 LVVVCDACERGFHMSCVNDGVEAAPSADWMCSDCRTGGERS 137
>At4g12620.1 68417.m01988 replication control protein, putative
similar to origin recognition complex subunit 1
(Replication control protein 1)[Homo sapiens]
SWISS-PROT:Q13415
Length = 813
Score = 35.9 bits (79), Expect = 0.028
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 409 RSERPLMAACDTCRRHYHLHCLRPPLTRPPK 501
+S+ +M CD C +HL CL+PPL P+
Sbjct: 174 KSDTNIMIECDDCLGGFHLKCLKPPLKEVPE 204
>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to chromatin
remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
GI:6478518; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00628: PHD-finger, PF00385:
'chromo' (CHRromatin Organization MOdifier)
Length = 2228
Score = 35.5 bits (78), Expect = 0.036
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 427 MAACDTCRRHYHLHCLRPPLTRPP 498
+ CD+C R YH CL PPL R P
Sbjct: 73 LLCCDSCPRTYHTACLNPPLKRIP 96
>At4g14700.1 68417.m02259 replication control protein, putative
similar to origin recognition complex subunit 1
(Replication control protein 1) [Homo sapiens]
SWISS-PROT:Q13415
Length = 809
Score = 34.7 bits (76), Expect = 0.064
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 424 LMAACDTCRRHYHLHCLRPPLTRPPK 501
+M CD C +HL+CL+PPL P+
Sbjct: 177 IMIECDDCLGGFHLNCLKPPLKEVPE 202
>At5g24330.1 68418.m02867 PHD finger family protein / SET
domain-containing protein contains Pfam domain, PF00628:
PHD-finger and PF00856: SET domain
Length = 349
Score = 33.1 bits (72), Expect = 0.19
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 436 CDTCRRHYHLHCLRPPLTRPPKKS 507
CD C + +HL CLRP L PK S
Sbjct: 50 CDKCDKGFHLFCLRPILVSVPKGS 73
>At5g09790.1 68418.m01133 PHD finger family protein / SET
domain-containing protein contains Pfam domain, PF00628:
PHD-finger and PF00856: SET domain
Length = 352
Score = 32.3 bits (70), Expect = 0.34
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 436 CDTCRRHYHLHCLRPPLTRPPKKS-NCTDGNVRSVIKHPTPNR 561
CD C R +H+ CLRP + R P + C D + + ++ T R
Sbjct: 82 CDKCDRGFHMKCLRPIVVRVPIGTWLCVDCSDQRPVRKETRKR 124
>At1g77250.1 68414.m08997 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 522
Score = 31.1 bits (67), Expect = 0.78
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 436 CDTCRRHYHLHCLRPPLTRPP 498
CD C YH++C+RPP P
Sbjct: 420 CDGCDDAYHIYCMRPPCESVP 440
>At5g39310.1 68418.m04760 expansin, putative (EXP24) similar to
expansin - Prunus armeniaca, EMBL:U93167; alpha-expansin
gene family, PMID:11641069
Length = 296
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/53 (28%), Positives = 19/53 (35%)
Frame = -2
Query: 446 HVSHAAIRGRSLRPPHTAHAPHNDAEQHKKKHNHLYLTT*YYASPETVWGENK 288
H SH A P H AH H H +H L + P + WG +
Sbjct: 26 HPSHGAHPAHGAHPSHGAHPSHGAHPSHGAHPSHGALPSHGGQVPHSGWGHGR 78
>At2g28630.1 68415.m03481 beta-ketoacyl-CoA synthase family protein
Length = 476
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 724 SVTALFACFSCLWDCSEDLDGGDAE 650
S A F C SC+W+ DL GG+++
Sbjct: 410 SFGAGFKCNSCVWEVVRDLTGGESK 434
>At3g29060.1 68416.m03635 EXS family protein / ERD1/XPR1/SYG1 family
protein similar to PHO1 protein [Arabidopsis thaliana]
GI:20069032; contains Pfam profiles PF03105: SPX domain,
PF03124: EXS family
Length = 794
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Frame = -2
Query: 497 GGRVSGGXXXXXXXXXRHVSHAAIRGRSLRPPHTAHAPHN--DAEQHKKKHNH 345
GG GG + + + + R+ R P +H HN +++H HNH
Sbjct: 66 GGGGGGGGPGLSRRISLYRAFSGLTNRASRSPKKSHKHHNPLSSKRHHHHHNH 118
>At3g05545.1 68416.m00609 transcription factor, putative / zinc
finger (C3HC4 type RING finger) family protein similar
to VIP2 protein [Avena fatua] gi|6996144|emb|CAB75506;
contains Pfam domain PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 425
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = +1
Query: 454 HYHLHCLRPPLTRPPKKSNCTDGNVRSVIKHPTPNRSVRKERSSSFPNTVQ*RRSHHRRP 633
HYH PP PP+ + + +V S + PTP + + ++ + ++ R H RP
Sbjct: 224 HYHGWDYHPPPPPPPQHFSASGAHVGSPTQ-PTPPPAAARTSRANGSDMIRPRPPHFTRP 282
>At1g77480.2 68414.m09023 nucellin protein, putative similar to
nucellin GB:AAB96882 GI:2290202 [Hordeum vulgare]
(nucellin: similar to aspartic protease and its specific
expression in nucellar cells during degeneration)
Length = 432
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 501 EEQLYGWQCSECDKTSDSEP 560
E+Q GW S+CDK SEP
Sbjct: 408 EKQRIGWISSDCDKLPKSEP 427
>At3g52100.1 68416.m05717 PHD finger family protein contains Pfam
profile PF00628: PHD-finger
Length = 696
Score = 27.9 bits (59), Expect = 7.3
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 409 RSERPLMAACDTCRRHYHLHCLR 477
+SER M +C C + YH +C++
Sbjct: 172 KSERAKMLSCKCCGKKYHRNCVK 194
>At3g20280.2 68416.m02570 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 482
Score = 27.9 bits (59), Expect = 7.3
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 412 SERPLMAACDTCRRHYHLHCLR 477
+E + CD C + YHL CL+
Sbjct: 56 NEMDTLLICDACEKAYHLKCLQ 77
>At3g20280.1 68416.m02569 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 743
Score = 27.9 bits (59), Expect = 7.3
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 412 SERPLMAACDTCRRHYHLHCLR 477
+E + CD C + YHL CL+
Sbjct: 317 NEMDTLLICDACEKAYHLKCLQ 338
>At3g08020.1 68416.m00979 PHD finger protein-related contains low
similarity to PHD-finger domain proteins
Length = 764
Score = 27.9 bits (59), Expect = 7.3
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +1
Query: 412 SERPLMAACDTCRRHYHLHC 471
SE M CD C+R H HC
Sbjct: 296 SESTPMVCCDICQRWVHCHC 315
>At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKLE)
identical to chromatin remodeling factor CHD3
[Arabidopsis thaliana] GI:6478518
Length = 1384
Score = 27.9 bits (59), Expect = 7.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 427 MAACDTCRRHYHLHCLRPPL 486
+ +C+TC +H CL PPL
Sbjct: 61 LVSCNTCTYAFHAKCLVPPL 80
>At1g15020.2 68414.m01795 thioredoxin family protein low similarity
to FAD-dependent sulfhydryl oxidase-2 [Rattus
norvegicus] GI:12483919; contains Pfam profiles PF00085:
Thioredoxin, PF04777: Erv1 / Alr family
Length = 528
Score = 27.9 bits (59), Expect = 7.3
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +1
Query: 436 CDTCRRHYHLHCL 474
CD CRRH+H CL
Sbjct: 339 CDDCRRHFHDMCL 351
>At1g15020.1 68414.m01794 thioredoxin family protein low similarity
to FAD-dependent sulfhydryl oxidase-2 [Rattus
norvegicus] GI:12483919; contains Pfam profiles PF00085:
Thioredoxin, PF04777: Erv1 / Alr family
Length = 502
Score = 27.9 bits (59), Expect = 7.3
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +1
Query: 436 CDTCRRHYHLHCL 474
CD CRRH+H CL
Sbjct: 339 CDDCRRHFHDMCL 351
>At5g63900.1 68418.m08023 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 557
Score = 27.5 bits (58), Expect = 9.6
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +1
Query: 427 MAACDTCRRHYHLHCLR 477
+ AC+ C+R +HL CL+
Sbjct: 315 LMACEQCQRRFHLTCLK 331
>At4g29940.1 68417.m04259 pathogenesis-related homeodomain protein
(PRHA) identical to Pathogenesis-related homeodomain
protein (PRHA) (SP:P48785) [Arabidopsis thaliana)
Length = 796
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/18 (61%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Frame = +1
Query: 436 CD-TCRRHYHLHCLRPPL 486
CD TC R +H CL PPL
Sbjct: 210 CDGTCNRAFHQKCLDPPL 227
>At3g26600.1 68416.m03320 armadillo/beta-catenin repeat family
protein contains Pfam profile: PF00514
armadillo/beta-catenin-like repeat
Length = 615
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2
Query: 620 IIADPQSPGTLRVSAVQVLGTIPQTGKAREKR 715
II D SP L++ A+Q +G++ +T ARE R
Sbjct: 451 IIKDVDSP-ILKIPAIQSIGSLARTFPARETR 481
>At3g20630.1 68416.m02610 ubiquitin-specific protease 14, putative
(UBP14) similar to ubiquitin-specific protease 14
GI:11993473 [Arabidopsis thaliana]
Length = 797
Score = 27.5 bits (58), Expect = 9.6
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +3
Query: 516 GWQCSECDKTSD 551
GW+CS+CDKT +
Sbjct: 177 GWKCSKCDKTEN 188
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,179,447
Number of Sequences: 28952
Number of extensions: 245834
Number of successful extensions: 849
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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