Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120266.Seq
(727 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0300 + 23932947-23933196,23934022-23934123,23934249-239343... 98 5e-21
01_06_1103 - 34543915-34543955,34544069-34544137,34544294-345443... 96 2e-20
01_01_1199 - 9657169-9657254,9657369-9657395,9657485-9657553,965... 95 7e-20
03_05_0830 + 28034179-28035492 29 3.8
01_05_0712 - 24531654-24531874,24532438-24532538,24532621-245327... 28 6.6
01_07_0050 - 40751994-40752086,40752193-40752300,40752501-407526... 28 8.7
>05_05_0300 +
23932947-23933196,23934022-23934123,23934249-23934317,
23934406-23934446
Length = 153
Score = 98.3 bits (234), Expect = 5e-21
Identities = 41/54 (75%), Positives = 46/54 (85%)
Frame = +3
Query: 510 RKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLP 671
RKSEIEYYA+L K VHH+ GNN++LGTACGKYYRVC L+I DPGDSDII T P
Sbjct: 97 RKSEIEYYAMLGKVSVHHFHGNNVDLGTACGKYYRVCCLSIIDPGDSDIINTTP 150
Score = 76.2 bits (179), Expect = 3e-14
Identities = 35/55 (63%), Positives = 42/55 (76%)
Frame = +3
Query: 24 VAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 188
V A QKK+ ++IN++L LVMKSGKY LGYK LKTLR K KL+I+A N PPLR
Sbjct: 43 VVAMMQKKSTDNINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLIILANNCPPLR 97
>01_06_1103 -
34543915-34543955,34544069-34544137,34544294-34544395,
34545603-34545708,34545998-34546079,34546850-34547142
Length = 230
Score = 96.3 bits (229), Expect = 2e-20
Identities = 39/56 (69%), Positives = 48/56 (85%)
Frame = +3
Query: 510 RKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLPEA 677
RKSEIEYYA+L K V+H++GNN++LGTACGKYYRVC L++ DPGDSDI LPE+
Sbjct: 174 RKSEIEYYAMLGKVSVYHFNGNNVDLGTACGKYYRVCCLSVVDPGDSDITKQLPES 229
Score = 72.9 bits (171), Expect = 2e-13
Identities = 34/49 (69%), Positives = 37/49 (75%)
Frame = +3
Query: 42 KKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 188
KK E IN++L LVMKSGKY LGYK LKTLR K KLVI+A N PPLR
Sbjct: 126 KKNAEGINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLVIVANNCPPLR 174
>01_01_1199 -
9657169-9657254,9657369-9657395,9657485-9657553,
9657922-9658023,9659895-9660000,9660145-9660165
Length = 136
Score = 94.7 bits (225), Expect = 7e-20
Identities = 40/52 (76%), Positives = 46/52 (88%)
Frame = +3
Query: 510 RKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITT 665
RKSEIEYYA+LAK VHH+ GNN++LGTACGKY+RVC L+I DPGDSDII T
Sbjct: 56 RKSEIEYYAMLAKVTVHHFHGNNVDLGTACGKYFRVCCLSIIDPGDSDIIKT 107
Score = 82.6 bits (195), Expect = 3e-16
Identities = 39/56 (69%), Positives = 46/56 (82%)
Frame = +3
Query: 21 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 188
MVAAKK KK+ ++IN++L LVMKSGKY LGYK L+TLR KAKLVII+ N PPLR
Sbjct: 1 MVAAKKTKKSTDNINNKLQLVMKSGKYTLGYKTVLRTLRNSKAKLVIISNNCPPLR 56
>03_05_0830 + 28034179-28035492
Length = 437
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 90 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 173
+GKY G TLKTL G + +I+ +N
Sbjct: 299 TGKYVFGVDDTLKTLEMGAVETLIVWEN 326
>01_05_0712 -
24531654-24531874,24532438-24532538,24532621-24532716,
24532951-24533048,24533827-24533883,24534764-24534895,
24535042-24535155,24535227-24535359,24535448-24535678,
24535761-24535843,24536009-24536137,24536504-24536599,
24536719-24536773,24537316-24537386,24537472-24537525,
24537691-24537768,24537985-24538117,24539381-24539496,
24539580-24539651,24540113-24540218,24540657-24540772,
24541170-24541319,24541410-24541492,24541591-24541669,
24542645-24542695
Length = 884
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 407 IINSIKLHSFLNTVLLDHNVGNLWSSL*TRYF 502
I++ I +H L T+ D +V N W + YF
Sbjct: 790 ILDCIDVHKLLETIFGDQDVANSWKARCAEYF 821
>01_07_0050 -
40751994-40752086,40752193-40752300,40752501-40752667,
40752756-40752882,40752984-40753145,40753674-40753837,
40753931-40754024,40754160-40754284,40754387-40754532,
40754676-40754764,40755524-40755589,40755990-40756148
Length = 499
Score = 27.9 bits (59), Expect = 8.7
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 483 VFKLDTSLCRKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYR-VCTLAITDPGDSDII 659
++ ++ LC+ EI ++ K V+ Y +G A GK R VC L DP D DI+
Sbjct: 260 IYSMEGELCKLPEI--ISVCKKYKVYTYMDEAHSIG-AVGKTGRGVCELLGVDPADVDIM 316
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,945,532
Number of Sequences: 37544
Number of extensions: 338835
Number of successful extensions: 675
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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