Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120266.Seq
         (727 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40337| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=7.3e-31)       106   2e-23
SB_21661| Best HMM Match : EGF_CA (HMM E-Value=0)                      28   6.7  

>SB_40337| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=7.3e-31)
          Length = 108

 Score =  106 bits (255), Expect = 2e-23
 Identities = 47/64 (73%), Positives = 55/64 (85%)
 Frame = +3

Query: 480 VVFKLDTSLCRKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 659
           V+   +T   RKSEIEYYA+LAKTGVHHY+GNNIELGTACGKY+RV  L+ITDPGDSDII
Sbjct: 36  VIIANNTPQLRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVSVLSITDPGDSDII 95

Query: 660 TTLP 671
            ++P
Sbjct: 96  RSMP 99



 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 38/46 (82%), Positives = 40/46 (86%)
 Frame = +3

Query: 51  IESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 188
           +ESINSRLALVMKSGK+ LG K TLKTLRQGKAKLVIIA N P LR
Sbjct: 1   MESINSRLALVMKSGKFTLGLKSTLKTLRQGKAKLVIIANNTPQLR 46


>SB_21661| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 1202

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +1

Query: 619 AHSPSQTLVTRTLSPLC 669
           AHSP+ TL+T TL+P C
Sbjct: 152 AHSPATTLITVTLTPNC 168


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,104,078
Number of Sequences: 59808
Number of extensions: 406240
Number of successful extensions: 944
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)