Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120266.Seq
         (727 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032631-5|CAA21573.1|  113|Caenorhabditis elegans Hypothetical ...   106   2e-23
L17337-6|AAA28221.2|   44|Caenorhabditis elegans Hypothetical pr...    32   0.48 
Z81098-1|CAB03183.1|  581|Caenorhabditis elegans Hypothetical pr...    29   2.6  

>AL032631-5|CAA21573.1|  113|Caenorhabditis elegans Hypothetical
           protein Y106G6H.3 protein.
          Length = 113

 Score =  106 bits (254), Expect = 2e-23
 Identities = 47/67 (70%), Positives = 56/67 (83%)
 Frame = +3

Query: 480 VVFKLDTSLCRKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 659
           V+   +T   RKSEIEYYA+LAKTGVHHY+GNNIELGTACG+ +RVCTLA+TD GDSDII
Sbjct: 46  VIIANNTPPLRKSEIEYYAMLAKTGVHHYNGNNIELGTACGRLFRVCTLAVTDAGDSDII 105

Query: 660 TTLPEAS 680
            ++P  S
Sbjct: 106 LSVPSES 112



 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 38/56 (67%), Positives = 45/56 (80%)
 Frame = +3

Query: 21  MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 188
           M  A K +K  E+INSRL++VMK+G+Y LGYKQTLK+L  GKAKLVIIA N PPLR
Sbjct: 1   MAPAAKPQKNAENINSRLSMVMKTGQYVLGYKQTLKSLLNGKAKLVIIANNTPPLR 56


>L17337-6|AAA28221.2|   44|Caenorhabditis elegans Hypothetical
           protein ZK686.1 protein.
          Length = 44

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 17/32 (53%), Positives = 23/32 (71%)
 Frame = +3

Query: 78  LVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKN 173
           +VMK+G+Y L Y+Q LK+L    AKLVI  K+
Sbjct: 1   MVMKTGQYVL-YEQKLKSLLNENAKLVINTKH 31


>Z81098-1|CAB03183.1|  581|Caenorhabditis elegans Hypothetical
           protein K07A12.1 protein.
          Length = 581

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +3

Query: 450 CWITMWGTYGVVFKLD---TSLCRKSEIEYYALLAK 548
           CW T W T  ++FKLD     L   S I+ +AL AK
Sbjct: 244 CWETAWNTAKMIFKLDPVKDPLAIISLIDIFALKAK 279


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,808,145
Number of Sequences: 27780
Number of extensions: 318946
Number of successful extensions: 674
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)