Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120266.Seq
         (727 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77940.1 68414.m09083 60S ribosomal protein L30 (RPL30B) simi...    98   6e-21
At3g18740.1 68416.m02379 60S ribosomal protein L30 (RPL30C) simi...    97   1e-20
At1g36240.1 68414.m04505 60S ribosomal protein L30 (RPL30A) simi...    95   4e-20
At1g80410.1 68414.m09413 acetyltransferase-related low similarit...    29   4.1  
At3g02300.1 68416.m00212 regulator of chromosome condensation (R...    28   5.5  
At5g37140.1 68418.m04458 tRNA-splicing endonuclease positive eff...    28   7.2  
At3g26618.1 68416.m03325 eukaryotic release factor 1 family prot...    28   7.2  
At5g52090.1 68418.m06466 tRNA-splicing endonuclease positive eff...    27   9.6  
At5g37150.1 68418.m04460 tRNA-splicing endonuclease positive eff...    27   9.6  
At4g19870.2 68417.m02913 kelch repeat-containing F-box family pr...    27   9.6  
At4g19870.1 68417.m02912 kelch repeat-containing F-box family pr...    27   9.6  
At3g57550.1 68416.m06408 guanylate kinase 2 (GK-2) identical to ...    27   9.6  
At1g12920.1 68414.m01500 eukaryotic release factor 1 family prot...    27   9.6  

>At1g77940.1 68414.m09083 60S ribosomal protein L30 (RPL30B) similar
           to ribosomal protein L30 GI:388034 from [Homo sapiens]
          Length = 112

 Score = 97.9 bits (233), Expect = 6e-21
 Identities = 43/70 (61%), Positives = 56/70 (80%), Gaps = 2/70 (2%)
 Frame = +3

Query: 468 GTYGVVFKLDTSL--CRKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDP 641
           G+ G +  + T+    R+SEIEYYA+LAK GVHHY+GNN++LGTACGKY+RV  L+I DP
Sbjct: 40  GSKGKLILISTNCPPLRRSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIVDP 99

Query: 642 GDSDIITTLP 671
           GDSDII ++P
Sbjct: 100 GDSDIIKSIP 109



 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 38/56 (67%), Positives = 43/56 (76%)
 Frame = +3

Query: 21  MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 188
           MV  KK KK+ E INSRLALVMKSGKY LGYK  LK+LR  K KL++I+ N PPLR
Sbjct: 1   MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLR 56


>At3g18740.1 68416.m02379 60S ribosomal protein L30 (RPL30C) similar
           to 60S RIBOSOMAL PROTEIN L30 GB:O49884 from [Lupinus
           luteus]
          Length = 112

 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 41/54 (75%), Positives = 48/54 (88%)
 Frame = +3

Query: 510 RKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLP 671
           R+SEIEYYA+LAK GVH Y+GNN++LGTACGKY+RV  L+I DPGDSDII TLP
Sbjct: 56  RRSEIEYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKTLP 109



 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 39/56 (69%), Positives = 44/56 (78%)
 Frame = +3

Query: 21  MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 188
           MVA KK KK+ E INSRLALVMKSGKY LGYK  LK+LR  K KL++I+ N PPLR
Sbjct: 1   MVAEKKAKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLR 56


>At1g36240.1 68414.m04505 60S ribosomal protein L30 (RPL30A) similar
           to GI:6984132 from [Euphorbia esula]
          Length = 112

 Score = 95.1 bits (226), Expect = 4e-20
 Identities = 40/54 (74%), Positives = 48/54 (88%)
 Frame = +3

Query: 510 RKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLP 671
           R+SEIEYYA+LAK GVHHY+ NN++LGTACGKY+RV  L+I DPGDSDII +LP
Sbjct: 56  RRSEIEYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLP 109



 Score = 84.2 bits (199), Expect = 8e-17
 Identities = 40/56 (71%), Positives = 45/56 (80%)
 Frame = +3

Query: 21  MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 188
           MVAAKK KK+ E INSRLALVMKSGKY LGYK  LK+LR  K KL++I+ N PPLR
Sbjct: 1   MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLR 56


>At1g80410.1 68414.m09413 acetyltransferase-related low similarity
           to acetyltransferase Tubedown-1 [Mus musculus]
           GI:8497318, N-TERMINAL ACETYLTRANSFERASE GB:P12945 from
           (Saccharomyces cerevisiae); contains Pfam profile
           PF00515 TPR Domain
          Length = 897

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 419 IKLHSFLNTVLLDHNVGNLWSSL*TRYF 502
           I +H+ L+TVLLD    + W S    YF
Sbjct: 814 IAVHTLLDTVLLDSQAASRWKSRCAEYF 841


>At3g02300.1 68416.m00212 regulator of chromosome condensation
           (RCC1) family protein weak similarity to UVB-resistance
           protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
           Pfam profile PF00415: Regulator of chromosome
           condensation (RCC1)
          Length = 471

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 51  IESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPP 182
           I  +   +++  KS  Y  GY Q+ +T R  + KL+ I K  PP
Sbjct: 7   IGEVAPSVSIPTKSAIYVWGYNQSGQTGRNEQEKLLRIPKQLPP 50


>At5g37140.1 68418.m04458 tRNA-splicing endonuclease positive
           effector-related contains similarity to SEN1, a positive
           effector of tRNA-splicing endonuclease [Saccharomyces
           cerevisiae] gi|172574|gb|AAB63976
          Length = 692

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -2

Query: 315 FNLTLFLRTVLLNHKGNPYFLSVRLHMHP 229
           F  +LF R VLL H  N + L+V+  MHP
Sbjct: 432 FGRSLFERLVLLGH--NKHLLNVQYRMHP 458


>At3g26618.1 68416.m03325 eukaryotic release factor 1 family protein
           / eRF1 family protein contains Pfam profiles: PF03463
           eRF1 domain 1, PF03464 eRF1 domain 2, PF03465 eRF1
           domain 3
          Length = 435

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 90  SGKYCLGYKQTLKTLRQGKAKLVIIAKN 173
           +GKY  G + TLK L  G  + +I+ +N
Sbjct: 298 TGKYVFGVEDTLKALEMGAVETLIVWEN 325


>At5g52090.1 68418.m06466 tRNA-splicing endonuclease positive
           effector-related contains similarity to SEN1, a positive
           effector of tRNA-splicing endonuclease [Saccharomyces
           cerevisiae] gi|172574|gb|AAB63976
          Length = 676

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 315 FNLTLFLRTVLLNHKGNPYFLSVRLHMHP 229
           F  +LF R VLL H  N + L V+  MHP
Sbjct: 415 FGRSLFERLVLLGH--NKHLLDVQYRMHP 441


>At5g37150.1 68418.m04460 tRNA-splicing endonuclease positive
           effector-related contains similarity to SEN1, a positive
           effector of tRNA-splicing endonuclease [Saccharomyces
           cerevisiae] gi|172574|gb|AAB63976
          Length = 839

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 315 FNLTLFLRTVLLNHKGNPYFLSVRLHMHP 229
           F  +LF R VLL H  N + L V+  MHP
Sbjct: 578 FGRSLFERLVLLGH--NKHLLDVQYRMHP 604


>At4g19870.2 68417.m02913 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 400

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +2

Query: 176 SSAKVRLLRSRVSQYLSKGCIW-SLTDKKYGFPLWFSKTVRKNK 304
           SS ++ + RS +    ++ C++  L+DK + FP WF+  V  N+
Sbjct: 65  SSTELYVARSHLRN--TEECVYVCLSDKSFEFPKWFTLWVNPNQ 106


>At4g19870.1 68417.m02912 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 400

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +2

Query: 176 SSAKVRLLRSRVSQYLSKGCIW-SLTDKKYGFPLWFSKTVRKNK 304
           SS ++ + RS +    ++ C++  L+DK + FP WF+  V  N+
Sbjct: 65  SSTELYVARSHLRN--TEECVYVCLSDKSFEFPKWFTLWVNPNQ 106


>At3g57550.1 68416.m06408 guanylate kinase 2 (GK-2) identical to
           guanylate kinase (GK-2) [Arabidopsis thaliana]
           gi|7861798|gb|AAF70409
          Length = 389

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 279 NHKGNPYFLSVRLH 238
           NH+GNP FL V++H
Sbjct: 45  NHEGNPLFLGVQIH 58


>At1g12920.1 68414.m01500 eukaryotic release factor 1 family protein
           / eRF1 family protein contains Pfam profiles: PF03463
           eRF1 domain 1, PF03464 eRF1 domain 2, PF03465 eRF1
           domain 3
          Length = 434

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 90  SGKYCLGYKQTLKTLRQGKAKLVIIAKN 173
           +GKY  G + TLK L  G  + +I+ +N
Sbjct: 297 TGKYVFGVEDTLKALEMGAIETLIVWEN 324


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,770,894
Number of Sequences: 28952
Number of extensions: 287449
Number of successful extensions: 593
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)