Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120265.Seq
         (854 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    29   0.84 
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    26   7.8  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    26   7.8  

>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = -3

Query: 426 RPISLSSCVGKLNENMIKMRLESYVEVNNIIPHVQYGFRRGRSC 295
           RP+++ S   KL + ++++ LE+  E   +     +GFR GRSC
Sbjct: 308 RPLTIGSPRDKLVQEILRIVLEAIYEP--LFNTASHGFRPGRSC 349


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 372 MRLESYVEVNNIIPHVQYGFRRGRSC 295
           M + +Y+  NN  PH+ YGF  G  C
Sbjct: 605 MNIGTYIICNNDCPHMVYGF-NGALC 629


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 274 ERDEAVSTTSPSPEAILNMWNDVVHLY 354
           ER  A+ + S S   I+NMW + V LY
Sbjct: 109 ERKSALFSISTSEVIIVNMWENQVGLY 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,669,087
Number of Sequences: 5004
Number of extensions: 77850
Number of successful extensions: 197
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)