Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120265.Seq
         (854 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320...    30   2.0  
06_03_0652 + 23166595-23166749,23168015-23168225,23168307-23168840     28   8.3  
02_03_0372 + 18273141-18274767,18275136-18276023,18276117-18276523     28   8.3  

>04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035,
            17532062-17533525
          Length = 1626

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 20/68 (29%), Positives = 34/68 (50%)
 Frame = -3

Query: 504  IPESWKTQCVIPLLKHDKPPEDPNSYRPISLSSCVGKLNENMIKMRLESYVEVNNIIPHV 325
            +PE      ++ + K D+P  D   YRPISL + V K+    +  RL   ++  +++   
Sbjct: 943  MPEGVNDTAIVLIPKKDQPI-DLKDYRPISLCNVVYKVVSKCLVNRLRPILD--DLVSKE 999

Query: 324  QYGFRRGR 301
            Q  F +GR
Sbjct: 1000 QSAFIQGR 1007


>06_03_0652 + 23166595-23166749,23168015-23168225,23168307-23168840
          Length = 299

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -1

Query: 656 FTWSEFCTSLQSRRNTTPGLDDCPYILIKNLNQSVQKKLLAN-LNALWHL 510
           F+  E CT++   R   P L +C Y  +     +V  +L  N LN LW++
Sbjct: 65  FSGKEGCTTMVDIRRAYPELGNCLYFDLAYKTHAVLYELPKNRLNWLWYI 114


>02_03_0372 + 18273141-18274767,18275136-18276023,18276117-18276523
          Length = 973

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = -1

Query: 608 TPGLDDCPYILIKNL-NQSVQKKLLANLNALWHLKKFLNLGKHSV*SLYLSMTNHLKTLT 432
           +P L +  ++ I NL N S+  ++   L  L  L+ +LNL ++S+         +L +L 
Sbjct: 89  SPSLGNLSFLSILNLTNASLTGEIPPELGRLSRLQ-YLNLNRNSLSGTIPGAMGNLTSLQ 147

Query: 431 HIVPYHCHL 405
            +  YH HL
Sbjct: 148 QLDLYHNHL 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,600,255
Number of Sequences: 37544
Number of extensions: 461663
Number of successful extensions: 1064
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)