Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120265.Seq
         (854 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    48   6e-06
Z70034-7|CAA93856.1|  855|Caenorhabditis elegans Hypothetical pr...    31   0.79 
Z93393-19|CAC70107.3|  971|Caenorhabditis elegans Hypothetical p...    29   4.2  
Z83229-4|CAD89896.1|  971|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U56965-9|AAB52662.2|  265|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AF040655-10|AAB95045.1|  195|Caenorhabditis elegans Hypothetical...    29   5.6  
U41036-9|ABA61867.1|  245|Caenorhabditis elegans Dopamine recept...    28   7.4  
U41036-8|ABA61866.1|  590|Caenorhabditis elegans Dopamine recept...    28   7.4  
U41036-7|ABA61865.1|  607|Caenorhabditis elegans Dopamine recept...    28   7.4  
U41036-6|ABA61864.1|  605|Caenorhabditis elegans Dopamine recept...    28   7.4  
AY485309-1|AAR37416.1|  607|Caenorhabditis elegans DOP-3 protein.      28   7.4  

>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 29/71 (40%), Positives = 40/71 (56%)
 Frame = -3

Query: 522 SLALKKIPESWKTQCVIPLLKHDKPPEDPNSYRPISLSSCVGKLNENMIKMRLESYVEVN 343
           SL+   IP+ WK   VI + K  K P   +SYRPISL S + KL E  I  R+++ +E  
Sbjct: 374 SLSTNIIPDKWKKANVIMIPKPKKDPAIASSYRPISLLSPIAKLLEKAILKRIKNSIE-- 431

Query: 342 NIIPHVQYGFR 310
              P  Q+GF+
Sbjct: 432 --SPAHQHGFK 440



 Score = 32.7 bits (71), Expect = 0.34
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 126 ISRLRFGHST-VPAHLARLGIVESSYCTFCNDSVGDIEHFI 7
           ++RLR GHS  V  + ARL   +   C  C D  GD++H +
Sbjct: 854 LARLRCGHSLLVEKYKARLEERQIKKCLNCGDEEGDVQHLL 894


>Z70034-7|CAA93856.1|  855|Caenorhabditis elegans Hypothetical
           protein C18E9.7 protein.
          Length = 855

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 716 LESYFQINNSLQKSSFLIEPFTWSEFCTSLQSRRNTTPGLDDC 588
           L+S+F++ +     S+   P TW+ F +    R   T G DDC
Sbjct: 716 LKSWFEVKDEEVWGSYRASPSTWNPFDSERVRRAAFTVGTDDC 758


>Z93393-19|CAC70107.3|  971|Caenorhabditis elegans Hypothetical
           protein Y48E1B.14a protein.
          Length = 971

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 186 CTVAPWYNKLKMASRDFITIISRLRFGHSTVPAHLARL 73
           C  APW  + +M  R+ + +   L F  + +P H  RL
Sbjct: 883 CNDAPWPTEQEMKMREELALRITLEFFQNNIPQHARRL 920


>Z83229-4|CAD89896.1|  971|Caenorhabditis elegans Hypothetical
           protein Y48E1B.14a protein.
          Length = 971

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 186 CTVAPWYNKLKMASRDFITIISRLRFGHSTVPAHLARL 73
           C  APW  + +M  R+ + +   L F  + +P H  RL
Sbjct: 883 CNDAPWPTEQEMKMREELALRITLEFFQNNIPQHARRL 920


>U56965-9|AAB52662.2|  265|Caenorhabditis elegans Hypothetical
           protein C15H9.2 protein.
          Length = 265

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 728 VIDNLESYFQINNSLQKSSFLIEPFTW 648
           +ID    Y+ +N +L+K+SF ++ F W
Sbjct: 14  IIDLQNRYYHVNAALEKTSFDVDGFKW 40


>AF040655-10|AAB95045.1|  195|Caenorhabditis elegans Hypothetical
           protein T24E12.11 protein.
          Length = 195

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/57 (24%), Positives = 28/57 (49%)
 Frame = -3

Query: 504 IPESWKTQCVIPLLKHDKPPEDPNSYRPISLSSCVGKLNENMIKMRLESYVEVNNII 334
           +PE  +++ +  L  H+K  ED + Y P+ L + V K  E +     +   ++  I+
Sbjct: 101 VPEQQQSEALAKL--HEKFDEDTSGYTPLDLLAAVAKYEETIEDFVFDDAPQMKRIV 155


>U41036-9|ABA61867.1|  245|Caenorhabditis elegans Dopamine receptor
           protein 3, isoformd protein.
          Length = 245

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 384 NMIKMRLESYVEVNNIIPHVQYGFRRGRS 298
           N++ + L+ Y+ + + I + QYG R GR+
Sbjct: 97  NLLAISLDRYIAIGHPISYAQYGARGGRA 125


>U41036-8|ABA61866.1|  590|Caenorhabditis elegans Dopamine receptor
           protein 3, isoformc protein.
          Length = 590

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 384 NMIKMRLESYVEVNNIIPHVQYGFRRGRS 298
           N++ + L+ Y+ + + I + QYG R GR+
Sbjct: 97  NLLAISLDRYIAIGHPISYAQYGARGGRA 125


>U41036-7|ABA61865.1|  607|Caenorhabditis elegans Dopamine receptor
           protein 3, isoformb protein.
          Length = 607

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 384 NMIKMRLESYVEVNNIIPHVQYGFRRGRS 298
           N++ + L+ Y+ + + I + QYG R GR+
Sbjct: 112 NLLAISLDRYIAIGHPISYAQYGARGGRA 140


>U41036-6|ABA61864.1|  605|Caenorhabditis elegans Dopamine receptor
           protein 3, isoforma protein.
          Length = 605

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 384 NMIKMRLESYVEVNNIIPHVQYGFRRGRS 298
           N++ + L+ Y+ + + I + QYG R GR+
Sbjct: 112 NLLAISLDRYIAIGHPISYAQYGARGGRA 140


>AY485309-1|AAR37416.1|  607|Caenorhabditis elegans DOP-3 protein.
          Length = 607

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 384 NMIKMRLESYVEVNNIIPHVQYGFRRGRS 298
           N++ + L+ Y+ + + I + QYG R GR+
Sbjct: 112 NLLAISLDRYIAIGHPISYAQYGARGGRA 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,094,010
Number of Sequences: 27780
Number of extensions: 430760
Number of successful extensions: 1013
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)