Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120264X.Seq
         (533 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P12828 Cluster: Early 40.9 kDa protein; n=5; Nucleopoly...   175   4e-43
UniRef50_O10278 Cluster: Putative early 40.3 kDa protein; n=8; N...    89   8e-17
UniRef50_Q67RK6 Cluster: Putative coenzyme A ligase; n=1; Symbio...    33   4.1  
UniRef50_Q62J76 Cluster: ABC transporter, periplasmic substrate-...    33   5.4  
UniRef50_Q6C768 Cluster: Similar to DEHA0A13277g Debaryomyces ha...    33   5.4  

>UniRef50_P12828 Cluster: Early 40.9 kDa protein; n=5;
           Nucleopolyhedrovirus|Rep: Early 40.9 kDa protein -
           Autographa californica nuclear polyhedrosis virus
           (AcMNPV)
          Length = 353

 Score =  175 bits (427), Expect = 4e-43
 Identities = 77/84 (91%), Positives = 82/84 (97%)
 Frame = +1

Query: 256 LKCIDFDYYGLCSKKMFCNLQTNLQKCVDQHYAELDVLTRQIYMSNPLVMLKCYQNGAYR 435
           LKCIDFDYYG C+K MFCNLQTNLQKCVDQHYAELDVLTRQ+YMS+PLV+LKCYQNGAYR
Sbjct: 72  LKCIDFDYYGFCAK-MFCNLQTNLQKCVDQHYAELDVLTRQVYMSDPLVVLKCYQNGAYR 130

Query: 436 LNGQIDLHLNRHIKCIKTQYNDEF 507
           LNGQI+LHLNRHIKCIKTQYNDEF
Sbjct: 131 LNGQINLHLNRHIKCIKTQYNDEF 154



 Score =  138 bits (333), Expect = 1e-31
 Identities = 65/65 (100%), Positives = 65/65 (100%)
 Frame = +2

Query: 38  MERLLNQLNLGVLPYITTKDIEDRLRDKIVAKAKLAFIKDCFEAVVCENGGLFVLTGGAA 217
           MERLLNQLNLGVLPYITTKDIEDRLRDKIVAKAKLAFIKDCFEAVVCENGGLFVLTGGAA
Sbjct: 1   MERLLNQLNLGVLPYITTKDIEDRLRDKIVAKAKLAFIKDCFEAVVCENGGLFVLTGGAA 60

Query: 218 VTCHI 232
           VTCHI
Sbjct: 61  VTCHI 65


>UniRef50_O10278 Cluster: Putative early 40.3 kDa protein; n=8;
           Nucleopolyhedrovirus|Rep: Putative early 40.3 kDa
           protein - Orgyia pseudotsugata multicapsid polyhedrosis
           virus (OpMNPV)
          Length = 355

 Score = 88.6 bits (210), Expect = 8e-17
 Identities = 40/65 (61%), Positives = 49/65 (75%)
 Frame = +2

Query: 38  MERLLNQLNLGVLPYITTKDIEDRLRDKIVAKAKLAFIKDCFEAVVCENGGLFVLTGGAA 217
           M+R+ +Q+  G LPYITT D+EDRLR++I AKA   F K CFEAVV +  GLFVL+GGAA
Sbjct: 1   MDRVASQIYSGALPYITTMDMEDRLRNRIAAKAGAKFFKACFEAVVADKSGLFVLSGGAA 60

Query: 218 VTCHI 232
             CHI
Sbjct: 61  TACHI 65



 Score = 68.5 bits (160), Expect = 9e-11
 Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
 Frame = +1

Query: 256 LKCIDFDYYGLCSKKM-FCNLQTNLQKCVDQHYAELDVLTRQIYMSNPLVMLKCYQNGAY 432
           LKC+DFDYY    + +    LQ  LQ CV  +   L  L + + M + L ++KC+QNGA+
Sbjct: 72  LKCLDFDYYNATQEWLQLARLQQRLQACVQDNLEILSRLAQSVRMQDDLFVVKCFQNGAF 131

Query: 433 RLNGQIDLHLNRHIKCIKTQYNDEF 507
             NG +   L   ++ ++T +N EF
Sbjct: 132 CFNGPVQARLVPCVETVRTSFNGEF 156


>UniRef50_Q67RK6 Cluster: Putative coenzyme A ligase; n=1;
           Symbiobacterium thermophilum|Rep: Putative coenzyme A
           ligase - Symbiobacterium thermophilum
          Length = 445

 Score = 33.1 bits (72), Expect = 4.1
 Identities = 22/67 (32%), Positives = 31/67 (46%)
 Frame = +1

Query: 214 GCDMPYRRRRLQKRLKCIDFDYYGLCSKKMFCNLQTNLQKCVDQHYAELDVLTRQIYMSN 393
           G   P  R+RL++   C  FD+YG+         +  LQ+ +  H+AE  VL   I   N
Sbjct: 225 GAGEPITRKRLERLYGCPAFDFYGITEVGPLLAGECRLQQGL--HWAEDHVLVEVI---N 279

Query: 394 PLVMLKC 414
           P  M  C
Sbjct: 280 PATMAPC 286


>UniRef50_Q62J76 Cluster: ABC transporter, periplasmic
           substrate-binding protein; n=57; Burkholderiales|Rep:
           ABC transporter, periplasmic substrate-binding protein -
           Burkholderia mallei (Pseudomonas mallei)
          Length = 650

 Score = 32.7 bits (71), Expect = 5.4
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -2

Query: 463 LSANRFDRLVYRLRFDNISALPTDLTCKFDALTRPIQRNVGRR 335
           +  N F+R+VY+L  D ++ L      ++D L   I RN  RR
Sbjct: 289 IGTNNFERIVYKLYGDGVARLEAFKAGEYDVLVEYIARNWARR 331


>UniRef50_Q6C768 Cluster: Similar to DEHA0A13277g Debaryomyces
           hansenii; n=1; Yarrowia lipolytica|Rep: Similar to
           DEHA0A13277g Debaryomyces hansenii - Yarrowia lipolytica
           (Candida lipolytica)
          Length = 152

 Score = 32.7 bits (71), Expect = 5.4
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -2

Query: 460 SANR-FDRLVYRLRFDNISALPTDLTCKFDALTRPIQRNVGRRI 332
           + NR F R+ Y   FD +  LPT L C F     P  + V  R+
Sbjct: 31  TGNRVFFRIRYSQEFDQLKTLPTPLLCNFYIRNDPFSKTVSERL 74


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 469,830,398
Number of Sequences: 1657284
Number of extensions: 8179426
Number of successful extensions: 21581
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 20988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21575
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 33739557507
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)