Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120264X.Seq
         (533 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26161| Best HMM Match : Herpes_LP (HMM E-Value=1.7)                 28   4.2  
SB_38709| Best HMM Match : Ank (HMM E-Value=3.6e-10)                   28   5.5  
SB_38954| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_51158| Best HMM Match : VWD (HMM E-Value=0.058)                     27   7.3  
SB_3748| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.6  

>SB_26161| Best HMM Match : Herpes_LP (HMM E-Value=1.7)
          Length = 412

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +2

Query: 272 LIITAFAQKKCFATCKLIYKNASTNITLNWTC*RVKFTC 388
           L + AFA KKC  T  +  KNA  +    W C R    C
Sbjct: 364 LSLPAFA-KKCMDTAAVCRKNAGKDWNKRWACRRAFVKC 401


>SB_38709| Best HMM Match : Ank (HMM E-Value=3.6e-10)
          Length = 218

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = -3

Query: 225 HVTAAPPVNTNKPPFSQTTASKQSLINANFALATILSRKRSSISFVVI*GRTPRFS*FNK 46
           H+  A P   NKP  S  T   ++    N     +L  + + ++F    GRTP    +NK
Sbjct: 142 HLLDADPRYVNKPSSSGQTPLHKAAGKGNIESVRLLLTRGADVNFADKQGRTPMLLAWNK 201


>SB_38954| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 157 IFDKCQLCFSHNFIAQAIFNILCRNI 80
           IFD CQ+ FSH       +N+  R++
Sbjct: 13  IFDNCQVAFSHGDDVGTTYNVRVRSV 38


>SB_51158| Best HMM Match : VWD (HMM E-Value=0.058)
          Length = 496

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 157 IFDKCQLCFSHNFIAQAIFNILCRNI 80
           IFD CQ+ FSH       +N+  R++
Sbjct: 118 IFDNCQVAFSHGDDVGTTYNVRVRSV 143


>SB_3748| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 232 RRRRLQKRLKCIDFDYYGLCSKKM 303
           R R +++  K I  D YG+C+KKM
Sbjct: 244 RERFIKQLSKYIPVDVYGICAKKM 267


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,167,855
Number of Sequences: 59808
Number of extensions: 279741
Number of successful extensions: 678
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)