Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120264X.Seq
         (533 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78419-9|CAB01707.1| 1153|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z73907-3|CAA98126.1| 1153|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U39654-3|AAA80406.1|  490|Caenorhabditis elegans Hypothetical pr...    28   3.7  
U39654-2|AAM51505.1|  510|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z78063-4|CAB01505.1|  685|Caenorhabditis elegans Hypothetical pr...    27   8.5  
U50829-1|AAC47113.1|  685|Caenorhabditis elegans SEL-1 protein.        27   8.5  

>Z78419-9|CAB01707.1| 1153|Caenorhabditis elegans Hypothetical protein
            F29D11.2 protein.
          Length = 1153

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 222  VTAAPPVNTNKPPFSQTTASKQSLINANFA 133
            +  +PP NT KPP   TTA++ + + A  A
Sbjct: 1112 ILKSPPRNTKKPPSRPTTATRPTAVAARTA 1141


>Z73907-3|CAA98126.1| 1153|Caenorhabditis elegans Hypothetical protein
            F29D11.2 protein.
          Length = 1153

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 222  VTAAPPVNTNKPPFSQTTASKQSLINANFA 133
            +  +PP NT KPP   TTA++ + + A  A
Sbjct: 1112 ILKSPPRNTKKPPSRPTTATRPTAVAARTA 1141


>U39654-3|AAA80406.1|  490|Caenorhabditis elegans Hypothetical
           protein C56G3.1a protein.
          Length = 490

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
 Frame = +1

Query: 265 IDFDYYGLCSKKMFCNLQTNLQKCVDQHYAELDVLTRQIYMS------NPLVMLKCYQNG 426
           + + + GLC +K F  LQT+L++     Y E+   T  I +S      N LV++   +  
Sbjct: 22  LTYPFDGLCLQKFFYQLQTSLRRFTP--YEEIIYTTVYIIISVAAVIGNGLVIMAVVRKK 79

Query: 427 AYRLNGQIDLHLNRHI-KCIKTQYNDEFVWL 516
             R N  + L LN  +   I    N  F+WL
Sbjct: 80  TMRTNRNV-LILNLALSNLILAITNIPFLWL 109


>U39654-2|AAM51505.1|  510|Caenorhabditis elegans Hypothetical
           protein C56G3.1b protein.
          Length = 510

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
 Frame = +1

Query: 265 IDFDYYGLCSKKMFCNLQTNLQKCVDQHYAELDVLTRQIYMS------NPLVMLKCYQNG 426
           + + + GLC +K F  LQT+L++     Y E+   T  I +S      N LV++   +  
Sbjct: 42  LTYPFDGLCLQKFFYQLQTSLRRFTP--YEEIIYTTVYIIISVAAVIGNGLVIMAVVRKK 99

Query: 427 AYRLNGQIDLHLNRHI-KCIKTQYNDEFVWL 516
             R N  + L LN  +   I    N  F+WL
Sbjct: 100 TMRTNRNV-LILNLALSNLILAITNIPFLWL 129


>Z78063-4|CAB01505.1|  685|Caenorhabditis elegans Hypothetical
           protein F45D3.5 protein.
          Length = 685

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +1

Query: 199 VNWRRGCDMPYRRRRLQKRLKCIDFDYYGLCSKKMFCNLQTNLQKCVDQH 348
           +NW+R  +  Y   R+    K  D+ YYGL ++       +N +  VD+H
Sbjct: 539 LNWQRSANQEYAAARV----KLGDYYYYGLGTEVDHSLAFSNYKMAVDRH 584


>U50829-1|AAC47113.1|  685|Caenorhabditis elegans SEL-1 protein.
          Length = 685

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +1

Query: 199 VNWRRGCDMPYRRRRLQKRLKCIDFDYYGLCSKKMFCNLQTNLQKCVDQH 348
           +NW+R  +  Y   R+    K  D+ YYGL ++       +N +  VD+H
Sbjct: 539 LNWQRSANQEYAAARV----KLGDYYYYGLGTEVDHSLAFSNYKMAVDRH 584


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,371,522
Number of Sequences: 27780
Number of extensions: 218171
Number of successful extensions: 623
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)