Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120264X.Seq
         (533 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67310.1 68418.m08488 cytochrome P450 family protein                27   5.9  
At4g38890.1 68417.m05508 dihydrouridine synthase family protein ...    27   5.9  

>At5g67310.1 68418.m08488 cytochrome P450 family protein
          Length = 507

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 256 LKCIDFDYYGLCSKKMFCNLQTNLQKCVDQH 348
           LK  D D Y   +KK+   L   +QK VD+H
Sbjct: 238 LKLFDLDGYRKRAKKLASKLDKFMQKLVDEH 268


>At4g38890.1 68417.m05508 dihydrouridine synthase family protein
           contains Pfam domain, PF01207: Dihydrouridine synthase
           (Dus)
          Length = 700

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +1

Query: 202 NWRRGCDMPYRRRRLQKRLKCIDFDYYGLCSKKMFCNLQ 318
           NW       + R R Q+  K  D+DY   C+K    NLQ
Sbjct: 498 NWGATAVTIHGRSRQQRYSKSADWDYIYQCTKNATTNLQ 536


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,420,668
Number of Sequences: 28952
Number of extensions: 189707
Number of successful extensions: 457
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)