Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120263.Seq
         (661 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   2.9  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   2.9  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   2.9  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   2.9  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   2.9  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   2.9  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    22   3.9  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   9.0  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 127 GRDHDRVHEDRRGLYLH 77
           G+D   VH  RRGL LH
Sbjct: 14  GQDKHMVHWFRRGLRLH 30


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +3

Query: 438 RGAIILAKLSVLPVRRGYWGNKIGSHTP 521
           R  + +  +++  V  G+W N I  H+P
Sbjct: 250 RADLWIIPIAIFLVSLGWWENYISRHSP 277


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +3

Query: 438 RGAIILAKLSVLPVRRGYWGNKIGSHTP 521
           R  + +  +++  V  G+W N I  H+P
Sbjct: 250 RADLWIIPIAIFLVSLGWWENYISRHSP 277


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +3

Query: 438 RGAIILAKLSVLPVRRGYWGNKIGSHTP 521
           R  + +  +++  V  G+W N I  H+P
Sbjct: 250 RADLWIIPIAIFLVSLGWWENYISRHSP 277


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +3

Query: 438 RGAIILAKLSVLPVRRGYWGNKIGSHTP 521
           R  + +  +++  V  G+W N I  H+P
Sbjct: 250 RADLWIIPIAIFLVSLGWWENYISRHSP 277


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -3

Query: 467 RQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNK 363
           ++  K NS +NGS D +      ++    + NG+K
Sbjct: 275 KEKDKPNSTTNGSPDVIKVEPELSDSEKTLCNGSK 309


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 503 LVTPVTSSNW*NRQLSKDNSASNGSGD 423
           L+   T+S+   R  +  NSASN SGD
Sbjct: 330 LLRHYTASSKNYRSATGGNSASNSSGD 356


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 527 KGRCVASDLVTPVTSSNW*NRQLSKD 450
           K +CV SD  T   S+ W N   + D
Sbjct: 256 KPKCVLSDHGTQFISNTWQNSLRAAD 281


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,555
Number of Sequences: 336
Number of extensions: 3255
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)