Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120263.Seq
(661 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ... 147 1e-36
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 1.4
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p... 27 2.4
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo... 26 4.2
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 25 7.3
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 9.7
SPCC63.13 |||DNAJ domain protein|Schizosaccharomyces pombe|chr 3... 25 9.7
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 25 9.7
>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 147 bits (356), Expect = 1e-36
Identities = 64/91 (70%), Positives = 82/91 (90%), Gaps = 1/91 (1%)
Frame = +3
Query: 249 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 428
+ ++I+D+FL P LNDEV+K++PVQKQTRAGQRTRFKAFV IGD++GH+GLG+KC+KEVA
Sbjct: 63 KEYQIVDYFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVA 121
Query: 429 TAIRGAIILAKLSVLPVRRGYWGNKIGS-HT 518
TAIRGAII+ KLS++P+RRGYWG +G HT
Sbjct: 122 TAIRGAIIMGKLSIMPIRRGYWGTALGDPHT 152
Score = 62.9 bits (146), Expect = 4e-11
Identities = 26/39 (66%), Positives = 32/39 (82%)
Frame = +2
Query: 512 PHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAQFLRSFFR 628
PHTVP KV+GKCGSVTVRL+PAPRG G+V+A + F +
Sbjct: 150 PHTVPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQ 188
Score = 58.8 bits (136), Expect = 6e-10
Identities = 24/37 (64%), Positives = 32/37 (86%)
Frame = +1
Query: 145 KEDQKEWVPVTKLGRLVREGGIDKLESIYLFSLPIKD 255
++++KEWVPVTKLGRLV+ G I +E IYL+SLPIK+
Sbjct: 28 RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKE 64
Score = 29.5 bits (63), Expect = 0.45
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +1
Query: 607 VPKKLLQMAGVQDCYT 654
V K+ LQ+AG++DCYT
Sbjct: 182 VTKRFLQLAGIEDCYT 197
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -1
Query: 142 RAHDHGRDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 17
++HDHG H + H DR + R R++R ++ PP
Sbjct: 720 QSHDHGHSHSKSH-DREKEKEKKKDREHRKHRETEEEDEGPP 760
>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 252
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 502 RSEATHRPLQGHRQVWFCNSPADSCPSWYWN 594
+S A L G + C + SCPS++WN
Sbjct: 151 QSRADRAKLDGLYECILCACCSTSCPSYWWN 181
>SPBC2D10.11c |||nucleosome assembly protein Nap2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 183 RPSCSRRRNRQTREHLLVFFTNQRFEIIDFFLGPSLNDE 299
R ++RNR+T + LV T +FF P L+D+
Sbjct: 265 RVETKKQRNRKTNQTRLVRTTVPNDSFFNFFSPPQLDDD 303
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 25.4 bits (53), Expect = 7.3
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -3
Query: 470 NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSG 336
+R LS + GSG L N+T+ +A+G T +SG
Sbjct: 373 SRNLSSSLQQTGGSGRLFVRLMEIRNLTIPLASGMTTRFTYTISG 417
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 9.7
Identities = 16/66 (24%), Positives = 31/66 (46%)
Frame = -3
Query: 515 VASDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSG 336
+++ VTP +SS+ + ++ +A + A+ HT N +V C+ +
Sbjct: 250 ISTVTVTPSSSSSSTSSEVPSSTAALALNAS-KASNHTSLNAGAIVGIVIGCVAFAVVMA 308
Query: 335 TCLFLY 318
C+FLY
Sbjct: 309 LCIFLY 314
>SPCC63.13 |||DNAJ domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 208
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = -2
Query: 612 RNCADTIPVPRGAGISRTVTEPHLPVTLQGTVCGFRSCYPSNLFELV 472
R A + PR + SRT +P G GFR + + FE V
Sbjct: 69 RESASSSAKPRQSFFSRTNPQPQSQSQQGGPSFGFRQSFSDSQFEQV 115
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +2
Query: 614 RSFFRWLVYRTATPQV 661
RS F+WL+ TATP++
Sbjct: 69 RSVFQWLIALTATPRL 84
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,674,004
Number of Sequences: 5004
Number of extensions: 55397
Number of successful extensions: 157
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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