Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120263.Seq
(661 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal prot... 144 6e-35
U10401-4|AAN65289.1| 937|Caenorhabditis elegans Myc and mondo-l... 33 0.18
U10401-3|AAA19059.2| 1009|Caenorhabditis elegans Myc and mondo-l... 33 0.18
AF264757-1|AAK20949.1| 1009|Caenorhabditis elegans Mlx interacto... 33 0.18
AF213473-1|AAL50027.1| 913|Caenorhabditis elegans basic helix-l... 33 0.18
AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ... 29 2.9
Z70681-3|CAA94579.2| 403|Caenorhabditis elegans Hypothetical pr... 29 3.9
AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear recep... 28 5.1
AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormo... 28 5.1
AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein. 28 6.8
AF003135-5|AAK18990.1| 678|Caenorhabditis elegans Hypothetical ... 28 6.8
AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical ... 28 6.8
AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical ... 28 6.8
U51999-7|AAA96089.1| 89|Caenorhabditis elegans Helix loop heli... 27 8.9
AF098999-3|AAC68726.2| 445|Caenorhabditis elegans Hypothetical ... 27 8.9
>U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 2 protein.
Length = 272
Score = 144 bits (348), Expect = 6e-35
Identities = 72/91 (79%), Positives = 79/91 (86%), Gaps = 1/91 (1%)
Frame = +3
Query: 249 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 428
+ FEIID L +L DEVLKI PVQKQT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEVA
Sbjct: 86 KEFEIIDA-LCSNLKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVA 144
Query: 429 TAIRGAIILAKLSVLPVRRGYWGNKIG-SHT 518
TAIRGAI+ AKL+V+PVRRGYWGNKIG HT
Sbjct: 145 TAIRGAIVAAKLAVVPVRRGYWGNKIGLPHT 175
Score = 66.1 bits (154), Expect = 2e-11
Identities = 29/31 (93%), Positives = 29/31 (93%)
Frame = +2
Query: 512 PHTVPCKVTGKCGSVTVRLIPAPRGTGIVSA 604
PHTVPCKVTGKC SV VRLIPAPRGTGIVSA
Sbjct: 173 PHTVPCKVTGKCASVMVRLIPAPRGTGIVSA 203
Score = 51.2 bits (117), Expect = 6e-07
Identities = 24/36 (66%), Positives = 27/36 (75%)
Frame = +1
Query: 148 EDQKEWVPVTKLGRLVREGGIDKLESIYLFSLPIKD 255
E + EW PVTKLGRLV+E I LE IYL SLPIK+
Sbjct: 52 EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKE 87
Score = 35.1 bits (77), Expect = 0.045
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = +1
Query: 607 VPKKLLQMAGVQDCYTS 657
VPKKLL MAG++DCYT+
Sbjct: 205 VPKKLLHMAGIEDCYTA 221
>U10401-4|AAN65289.1| 937|Caenorhabditis elegans Myc and mondo-like
protein 1, isoformb protein.
Length = 937
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = -2
Query: 651 VAVLYTSHLKKLLRNCADTIPVPRGAGISRTVTEPHLPVTLQGT 520
V++ + SH++++L N +P P + + T +P+LP LQ T
Sbjct: 475 VSLPHQSHVERILNNQPPLVPPPSRSNLLPTQNDPYLPQFLQST 518
>U10401-3|AAA19059.2| 1009|Caenorhabditis elegans Myc and mondo-like
protein 1, isoforma protein.
Length = 1009
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = -2
Query: 651 VAVLYTSHLKKLLRNCADTIPVPRGAGISRTVTEPHLPVTLQGT 520
V++ + SH++++L N +P P + + T +P+LP LQ T
Sbjct: 475 VSLPHQSHVERILNNQPPLVPPPSRSNLLPTQNDPYLPQFLQST 518
>AF264757-1|AAK20949.1| 1009|Caenorhabditis elegans Mlx interactor
protein.
Length = 1009
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = -2
Query: 651 VAVLYTSHLKKLLRNCADTIPVPRGAGISRTVTEPHLPVTLQGT 520
V++ + SH++++L N +P P + + T +P+LP LQ T
Sbjct: 475 VSLPHQSHVERILNNQPPLVPPPSRSNLLPTQNDPYLPQFLQST 518
>AF213473-1|AAL50027.1| 913|Caenorhabditis elegans basic
helix-loop-helix leucinezipper WBSCR14-like protein
protein.
Length = 913
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = -2
Query: 651 VAVLYTSHLKKLLRNCADTIPVPRGAGISRTVTEPHLPVTLQGT 520
V++ + SH++++L N +P P + + T +P+LP LQ T
Sbjct: 379 VSLPHQSHVERILNNQPPLVPPPSRSNLLPTQNDPYLPQFLQST 422
>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
protein R52.2 protein.
Length = 1019
Score = 29.1 bits (62), Expect = 2.9
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Frame = +1
Query: 151 DQKEWVPVTKLGRLVREGGIDKLESI----YLFSLPIKDSRSLISSSARP*MMRF*RSCL 318
DQ + ++K + G D L+SI YL + IKD + I+ S+ P ++ +
Sbjct: 574 DQLDLPSISKKQLKIATFGSDNLQSIKSKGYLVNFLIKDKKIPIALSSVPSIVNSITTAK 633
Query: 319 YRNKHVPDSAHVSRHLLPLATT 384
+ V D H +LP TT
Sbjct: 634 INEETVQDLIHNDNAILPRTTT 655
>Z70681-3|CAA94579.2| 403|Caenorhabditis elegans Hypothetical
protein C30F2.3 protein.
Length = 403
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -3
Query: 488 TSSNW*NRQLSKDNSASNGSG 426
TS+NW N QL NS + GSG
Sbjct: 309 TSTNWQNNQLGVSNSGAPGSG 329
>AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear receptor
NHR-121 protein.
Length = 461
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +2
Query: 302 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 445
+++ CT NTCR + + IC R + G E Q R C++ R
Sbjct: 53 NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102
>AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 121 protein.
Length = 461
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +2
Query: 302 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 445
+++ CT NTCR + + IC R + G E Q R C++ R
Sbjct: 53 NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102
>AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein.
Length = 1666
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 594 IPVPRGAGISRTVTEPHLPVTLQGTVCGFRS 502
IP P+G S T P + VTL G + RS
Sbjct: 1340 IPAPKGVASSSNNTSPRVNVTLGGALSSSRS 1370
>AF003135-5|AAK18990.1| 678|Caenorhabditis elegans Hypothetical
protein W03F11.6b protein.
Length = 678
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 594 IPVPRGAGISRTVTEPHLPVTLQGTVCGFRS 502
IP P+G S T P + VTL G + RS
Sbjct: 358 IPAPKGVASSSNNTSPRVNVTLGGALSSSRS 388
>AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical
protein W03F11.6c protein.
Length = 1419
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 594 IPVPRGAGISRTVTEPHLPVTLQGTVCGFRS 502
IP P+G S T P + VTL G + RS
Sbjct: 1338 IPAPKGVASSSNNTSPRVNVTLGGALSSSRS 1368
>AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical
protein W03F11.6a protein.
Length = 1658
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 594 IPVPRGAGISRTVTEPHLPVTLQGTVCGFRS 502
IP P+G S T P + VTL G + RS
Sbjct: 1338 IPAPKGVASSSNNTSPRVNVTLGGALSSSRS 1368
>U51999-7|AAA96089.1| 89|Caenorhabditis elegans Helix loop helix
protein 15 protein.
Length = 89
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 198 RRRNRQTREHLLVFFTNQRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFK-AFVAI 374
R+R R T ++ + T +R + F + S +L +PV+K+ + RF A+++
Sbjct: 24 RKRRRATPKYRNLHATRERIRVESFNMAFSQLRALLPTLPVEKKLSKIEILRFSIAYISF 83
Query: 375 GDN 383
DN
Sbjct: 84 LDN 86
>AF098999-3|AAC68726.2| 445|Caenorhabditis elegans Hypothetical
protein W04C9.3 protein.
Length = 445
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 654 GVAVLYTSHLKKLLRNCADTIPVPRGAGISR 562
G+ + SH+ K ++C IPVP G +S+
Sbjct: 414 GMVCFFGSHMLKKTQDCEMPIPVPEGYYLSK 444
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,304,255
Number of Sequences: 27780
Number of extensions: 334257
Number of successful extensions: 1058
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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