Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120263.Seq
(661 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 162 2e-40
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 161 3e-40
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 161 5e-40
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 161 5e-40
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 161 5e-40
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 161 5e-40
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 47 1e-05
At3g01450.1 68416.m00069 expressed protein 29 2.7
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 29 3.6
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 4.8
At5g56520.1 68418.m07054 expressed protein 28 6.3
At2g04050.1 68415.m00386 MATE efflux family protein similar to r... 28 6.3
At5g35970.1 68418.m04332 DNA-binding protein, putative similar t... 27 8.4
At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putativ... 27 8.4
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 162 bits (393), Expect = 2e-40
Identities = 73/91 (80%), Positives = 84/91 (92%), Gaps = 1/91 (1%)
Frame = +3
Query: 249 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 428
+ ++IID +GPSL DEV+KIMPVQKQTRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEVA
Sbjct: 74 KEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVA 133
Query: 429 TAIRGAIILAKLSVLPVRRGYWGNKIGS-HT 518
TAIRGAIILAKLSV+P+RRGYWGNKIG HT
Sbjct: 134 TAIRGAIILAKLSVVPIRRGYWGNKIGKPHT 164
Score = 69.3 bits (162), Expect = 2e-12
Identities = 28/33 (84%), Positives = 33/33 (100%)
Frame = +2
Query: 509 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAQ 607
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A+
Sbjct: 161 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAR 193
Score = 56.4 bits (130), Expect = 2e-08
Identities = 23/35 (65%), Positives = 31/35 (88%)
Frame = +1
Query: 151 DQKEWVPVTKLGRLVREGGIDKLESIYLFSLPIKD 255
++++WVPVTKLGRLV+EG I K+E IYL SLP+K+
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKE 75
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1
Query: 607 VPKKLLQMAGVQDCYTS 657
VPKK+LQ AG+ D +TS
Sbjct: 194 VPKKVLQFAGIDDVFTS 210
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 161 bits (392), Expect = 3e-40
Identities = 74/91 (81%), Positives = 83/91 (91%), Gaps = 1/91 (1%)
Frame = +3
Query: 249 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 428
+ ++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 83 KEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 142
Query: 429 TAIRGAIILAKLSVLPVRRGYWGNKIGS-HT 518
TAIRGAIILAKLSV+PVRRGYWGNKIG HT
Sbjct: 143 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 173
Score = 69.3 bits (162), Expect = 2e-12
Identities = 28/33 (84%), Positives = 33/33 (100%)
Frame = +2
Query: 509 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAQ 607
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A+
Sbjct: 170 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAR 202
Score = 51.2 bits (117), Expect = 6e-07
Identities = 21/35 (60%), Positives = 29/35 (82%)
Frame = +1
Query: 151 DQKEWVPVTKLGRLVREGGIDKLESIYLFSLPIKD 255
++++WVPVTKLGRLV G I ++E IYL SLP+K+
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKE 84
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1
Query: 607 VPKKLLQMAGVQDCYTS 657
VPKK+LQ AG+ D +TS
Sbjct: 203 VPKKVLQFAGIDDVFTS 219
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 161 bits (390), Expect = 5e-40
Identities = 74/91 (81%), Positives = 83/91 (91%), Gaps = 1/91 (1%)
Frame = +3
Query: 249 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 428
+ ++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 82 KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141
Query: 429 TAIRGAIILAKLSVLPVRRGYWGNKIGS-HT 518
TAIRGAIILAKLSV+PVRRGYWGNKIG HT
Sbjct: 142 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 69.3 bits (162), Expect = 2e-12
Identities = 28/33 (84%), Positives = 33/33 (100%)
Frame = +2
Query: 509 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAQ 607
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A+
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAR 201
Score = 51.6 bits (118), Expect = 4e-07
Identities = 22/35 (62%), Positives = 28/35 (80%)
Frame = +1
Query: 151 DQKEWVPVTKLGRLVREGGIDKLESIYLFSLPIKD 255
++ +WVPVTKLGRLV + I KLE IYL SLP+K+
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1
Query: 607 VPKKLLQMAGVQDCYTS 657
VPKK+LQ AG+ D +TS
Sbjct: 202 VPKKVLQFAGIDDVFTS 218
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 161 bits (390), Expect = 5e-40
Identities = 74/91 (81%), Positives = 83/91 (91%), Gaps = 1/91 (1%)
Frame = +3
Query: 249 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 428
+ ++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 82 KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141
Query: 429 TAIRGAIILAKLSVLPVRRGYWGNKIGS-HT 518
TAIRGAIILAKLSV+PVRRGYWGNKIG HT
Sbjct: 142 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 69.3 bits (162), Expect = 2e-12
Identities = 28/33 (84%), Positives = 33/33 (100%)
Frame = +2
Query: 509 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAQ 607
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A+
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAR 201
Score = 51.6 bits (118), Expect = 4e-07
Identities = 22/35 (62%), Positives = 28/35 (80%)
Frame = +1
Query: 151 DQKEWVPVTKLGRLVREGGIDKLESIYLFSLPIKD 255
++ +WVPVTKLGRLV + I KLE IYL SLP+K+
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1
Query: 607 VPKKLLQMAGVQDCYTS 657
VPKK+LQ AG+ D +TS
Sbjct: 202 VPKKVLQFAGIDDVFTS 218
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 161 bits (390), Expect = 5e-40
Identities = 74/91 (81%), Positives = 83/91 (91%), Gaps = 1/91 (1%)
Frame = +3
Query: 249 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 428
+ ++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 82 KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141
Query: 429 TAIRGAIILAKLSVLPVRRGYWGNKIGS-HT 518
TAIRGAIILAKLSV+PVRRGYWGNKIG HT
Sbjct: 142 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 69.3 bits (162), Expect = 2e-12
Identities = 28/33 (84%), Positives = 33/33 (100%)
Frame = +2
Query: 509 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAQ 607
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A+
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAR 201
Score = 51.6 bits (118), Expect = 4e-07
Identities = 22/35 (62%), Positives = 28/35 (80%)
Frame = +1
Query: 151 DQKEWVPVTKLGRLVREGGIDKLESIYLFSLPIKD 255
++ +WVPVTKLGRLV + I KLE IYL SLP+K+
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1
Query: 607 VPKKLLQMAGVQDCYTS 657
VPKK+LQ AG+ D +TS
Sbjct: 202 VPKKVLQFAGIDDVFTS 218
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 161 bits (390), Expect = 5e-40
Identities = 74/91 (81%), Positives = 83/91 (91%), Gaps = 1/91 (1%)
Frame = +3
Query: 249 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 428
+ ++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 82 KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141
Query: 429 TAIRGAIILAKLSVLPVRRGYWGNKIGS-HT 518
TAIRGAIILAKLSV+PVRRGYWGNKIG HT
Sbjct: 142 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 69.3 bits (162), Expect = 2e-12
Identities = 28/33 (84%), Positives = 33/33 (100%)
Frame = +2
Query: 509 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAQ 607
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A+
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAR 201
Score = 51.6 bits (118), Expect = 4e-07
Identities = 22/35 (62%), Positives = 28/35 (80%)
Frame = +1
Query: 151 DQKEWVPVTKLGRLVREGGIDKLESIYLFSLPIKD 255
++ +WVPVTKLGRLV + I KLE IYL SLP+K+
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1
Query: 607 VPKKLLQMAGVQDCYTS 657
VPKK+LQ AG+ D +TS
Sbjct: 202 VPKKVLQFAGIDDVFTS 218
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/62 (30%), Positives = 40/62 (64%)
Frame = +3
Query: 294 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 473
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 474 PV 479
V
Sbjct: 209 QV 210
>At3g01450.1 68416.m00069 expressed protein
Length = 326
Score = 29.1 bits (62), Expect = 2.7
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = -1
Query: 511 LPILLPQ*PLRTGKTDNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPAR 332
L +LL Q L++ + A + VA + H +P + P L P N R+R A
Sbjct: 163 LDLLLTQLLLKSSQDKRFVCEAAEKALVAMTA-HVSPALLLPKLQPFLKNRNPRIRAKAS 221
Query: 331 VCF 323
CF
Sbjct: 222 TCF 224
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 28.7 bits (61), Expect = 3.6
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -1
Query: 502 LLPQ*PLRTGKTDNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCF 323
LL Q L++ + A R VA + H +P + P L P N R+R A CF
Sbjct: 166 LLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKASACF 224
Query: 322 CTGMIFRTSSFR 287
+G + R + R
Sbjct: 225 -SGCVPRLEAAR 235
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 360 AFVAIGDNNGHIGLGVKCSKE 422
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At5g56520.1 68418.m07054 expressed protein
Length = 101
Score = 27.9 bits (59), Expect = 6.3
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +1
Query: 583 WYWNCVCAVPKKLLQMAGVQD 645
W+WN +C P ++L G +D
Sbjct: 54 WFWNYICVPPPEILYFDGRRD 74
>At2g04050.1 68415.m00386 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile: PF01554
uncharacterized membrane protein family
Length = 476
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +2
Query: 515 HTVPCKVTGKCGSVTVRL 568
H VPCK T K G VTV L
Sbjct: 11 HLVPCKDTWKSGQVTVEL 28
>At5g35970.1 68418.m04332 DNA-binding protein, putative similar to
SWISS-PROT:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2, SMUBP-2)
[Mesocricetus auratus]
Length = 961
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 340 PARVCFCTGMIFRTSSFRDGPRKKSMISNL*LVKKTSK 227
P R FC+G+ +S + PR+KS +S+ KK K
Sbjct: 43 PTRKVFCSGVNGGSSVTKKKPRRKSNVSDKLRFKKIEK 80
>At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putative
(UBP16) similar to ubiquitin-specific protease 16
GI:11993477 [Arabidopsis thaliana]
Length = 1008
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -3
Query: 512 ASDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAAL 408
++D ++P+ SSN + L K SAS+ +G LA L
Sbjct: 403 STDALSPLDSSNLSHVTLPKSKSASSENGSMLAPL 437
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,528,367
Number of Sequences: 28952
Number of extensions: 317010
Number of successful extensions: 935
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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