Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120262X.Seq
(611 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing] |Schizosacch... 28 1.2
SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual 27 1.6
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 26 3.7
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 26 3.7
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera... 26 4.9
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch... 26 4.9
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 25 6.5
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom... 25 6.5
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa... 25 8.6
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch... 25 8.6
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 25 8.6
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc... 25 8.6
>SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing]
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 237
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -3
Query: 510 FTGIHVPSAREKYASGEAACKPNELKNMPQSKTVSTTAL 394
F IH PS Y + + KP +LKN+ S + ++
Sbjct: 107 FRDIHRPSKPRHYLAHKVMAKPGKLKNILGSNVIDVNSI 145
>SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 27.5 bits (58), Expect = 1.6
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 198 WPFRHVKSLHDPKVLDEYLCLNANETT 118
WP +KS+ P + +CL NE+T
Sbjct: 156 WPLNIIKSIGLPSQIKRKICLQLNEST 182
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 26.2 bits (55), Expect = 3.7
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Frame = +2
Query: 230 AIAFGSQHTSASSNSSGNMLQRPALLFGNAQESHVKETNGIMLDHMREIIKNKITSAVVE 409
A+A HT SS + GNMLQ +++ ++ + V+ N + E+++N + S V
Sbjct: 1339 ALAVVVSHTKYSSEAIGNMLQ--SIIDISSFKDIVRYGN--TYEAFEELLENPMQSKVTH 1394
Query: 410 TVLDCG------MFFSSLGLHAASPDAYFSLADGT 496
+L+ +F SL L + D F L T
Sbjct: 1395 IILNLPDIEAYVLFVKSLQLCSLYKDTKFILVTST 1429
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 26.2 bits (55), Expect = 3.7
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +2
Query: 311 GNAQESHVKETNGIMLDHMREIIKNKITSAVVETVLDCGMFFSSLGLHAASPDA 472
G ++ +E + ++L M+EI + K+ V + V+ +FS AA+ DA
Sbjct: 111 GEKKQFTAQEISAMVLTKMKEISEAKLNKRVEKAVITVPAYFSD-SQRAATKDA 163
>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 548
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 180 KSLHDPKVLDEYLCLNANETTALDSTRSFSHNC 82
KS H ++LD+ L+ T D+T F NC
Sbjct: 78 KSHHRHQLLDQNSELSQENLTKCDTTHDFEKNC 110
>SPCC126.14 |prp18||U5 snRNP-associated protein
Prp18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 343
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/43 (25%), Positives = 25/43 (58%)
Frame = +2
Query: 287 LQRPALLFGNAQESHVKETNGIMLDHMREIIKNKITSAVVETV 415
++ P LFG ++E+ ++ ++ E I+N++ + VET+
Sbjct: 136 MKEPIRLFGESEEATIQRYYSLLKYKKLEEIENELLTKGVETI 178
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +3
Query: 123 SRWRSNKDI-HPKPLDRAEILRVEKATRGQSKNEL 224
S + S+ D+ H K L+++EIL ++ RGQ + +L
Sbjct: 190 SEFVSHLDMYHSKLLNKSEILSTKRVNRGQDQFDL 224
>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 554
Score = 25.4 bits (53), Expect = 6.5
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -3
Query: 207 VPWWPFRHVKSLHDPK 160
+PW P +H+K HD K
Sbjct: 259 IPWPPNQHIKFAHDDK 274
>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 503
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Frame = -1
Query: 332 RDFLV---RFQTKALVVVTCCRTNWTMQTCAAIQ 240
RDF++ R + + VT CR N CA I+
Sbjct: 60 RDFMINSYRLEPNEYLTVTACRRNLVGDVCAIIR 93
>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 716
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -3
Query: 309 NKSAGRCNMLPDELDDADVCCDPNAIASTAHFCFVPW 199
N+ G C+ L D L+ AD+ + + A T + F W
Sbjct: 518 NEIEGFCSKLADRLNAADIRTEADLRAYTPGYKFSHW 554
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Frame = -1
Query: 332 RDFLV---RFQTKALVVVTCCRTNWTMQTCAAIQ 240
RDF++ R +K + T CR N CA ++
Sbjct: 94 RDFMISTFRLNSKVYLTFTACRRNLAGDVCAVLR 127
>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 920
Score = 25.0 bits (52), Expect = 8.6
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = -3
Query: 135 NANETTALDSTRSFSH 88
N+NET+ D T++F+H
Sbjct: 41 NSNETSGYDQTKNFTH 56
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,659,574
Number of Sequences: 5004
Number of extensions: 55506
Number of successful extensions: 168
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -