Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120262X.Seq
(611 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1337 - 35780076-35780290,35780377-35780408,35780490-357805... 31 0.95
01_05_0387 - 21695277-21695351,21696186-21696228,21696325-216964... 30 1.3
03_02_0984 + 12947444-12947530,12949071-12949127,12949833-129499... 29 2.2
07_03_1182 - 24610862-24611637,24612223-24612340,24612441-246141... 29 2.9
04_03_0428 - 15820169-15820236,15820296-15820367,15820450-158205... 28 6.7
04_03_0418 - 15686775-15686842,15686902-15686973,15687056-156871... 28 6.7
03_05_0381 + 23639013-23639146,23639215-23639917 28 6.7
12_02_1110 + 26154024-26154314,26154400-26154944,26155023-261551... 27 8.9
>02_05_1337 -
35780076-35780290,35780377-35780408,35780490-35780584,
35780670-35780743,35780851-35780986,35781072-35781135,
35781333-35781395,35781514-35781656,35781752-35781889,
35781973-35782094,35782210-35782375,35782647-35782652,
35782988-35783059,35783241-35783348,35783719-35783848,
35783964-35784070,35784896-35785005,35785302-35785435,
35785528-35785982,35786068-35786595
Length = 965
Score = 30.7 bits (66), Expect = 0.95
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +3
Query: 138 NKDIHPKPLDRAEILRVEKATRG 206
N DIH +PL AE ++++KA RG
Sbjct: 394 NSDIHSRPLSDAERVKIKKALRG 416
>01_05_0387 -
21695277-21695351,21696186-21696228,21696325-21696454,
21696812-21697028,21697202-21697248,21698132-21698228,
21698637-21698687,21698788-21698919,21699345-21699499,
21700461-21700534,21700566-21700730,21701368-21701420
Length = 412
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Frame = +3
Query: 213 KNELWTLLRLDRSTRLHRP-----IRPATCYNDQRFCLETHKKVTSK 338
K E+ TLLR D + HRP IR AT +D RF L H+K+ K
Sbjct: 249 KEEVRTLLRQDPNFWTHRPLSEMMIRAAT--DDVRFLLSIHEKMMEK 293
>03_02_0984 +
12947444-12947530,12949071-12949127,12949833-12949904,
12950050-12950112,12950955-12951131,12951503-12951628,
12951711-12951777,12952019-12952215,12952617-12952691,
12954524-12954554,12954714-12954802,12955120-12955188,
12955306-12955425,12955963-12956081,12956303-12956441,
12956538-12957038,12957293-12957592,12957694-12957875,
12958277-12958388,12958953-12959072
Length = 900
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Frame = -3
Query: 381 FIISRMWSNMMPLVSLT*LSCAFPNKSAGRCNMLPDELDDADVCCDPNAIASTAH----F 214
F++ + + ++ L L AFP+ G + L D + + D+ C I +H F
Sbjct: 394 FVVPKKLATLVANFGLQALPGAFPSVVVGAVHALFDRISNMDMECRTRLILWFSHHLSNF 453
Query: 213 CFV-PWWPFRHVKSL 172
F+ PW + +VK L
Sbjct: 454 QFIWPWQEWAYVKDL 468
>07_03_1182 -
24610862-24611637,24612223-24612340,24612441-24614120,
24614253-24614320,24615370-24615550
Length = 940
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -3
Query: 537 VSVIVRTFYFTGIHVPSAREKYASGEAACKPNELKNMPQSKTVSTTALV 391
+SV+ ++Y T + + S E PN L + PQSKT S + +
Sbjct: 665 ISVLDTSYYHTRLSYSFKDGETHSSEECWNPNSLPDTPQSKTSSEVSQI 713
>04_03_0428 -
15820169-15820236,15820296-15820367,15820450-15820519,
15824222-15824312,15825023-15825093,15825176-15825341,
15826169-15826393,15829075-15829307,15829464-15829618,
15829636-15829855
Length = 456
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +2
Query: 263 SSNSSGNMLQRPALLFGNAQESHVKETNGIMLDHMREIIKNKITSAV 403
S N +G LQ PA +FG + +G L ++ EII +++ AV
Sbjct: 288 SINVAGTTLQLPANIFGTTKTKGTFIDSGSTLVYLPEIIYSELILAV 334
>04_03_0418 -
15686775-15686842,15686902-15686973,15687056-15687125,
15690828-15690918,15691629-15691699,15691782-15691947,
15692775-15692999,15695681-15695913,15696070-15696224,
15696242-15696461
Length = 456
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +2
Query: 263 SSNSSGNMLQRPALLFGNAQESHVKETNGIMLDHMREIIKNKITSAV 403
S N +G LQ PA +FG + +G L ++ EII +++ AV
Sbjct: 288 SINVAGTTLQLPANIFGTTKTKGTFIDSGSTLVYLPEIIYSELILAV 334
>03_05_0381 + 23639013-23639146,23639215-23639917
Length = 278
Score = 27.9 bits (59), Expect = 6.7
Identities = 21/54 (38%), Positives = 24/54 (44%)
Frame = -2
Query: 562 RHASAPRSCLGNCTDILFHRNPRSVGERKIRIGRSGVQTQRAKEHAAIQNRFND 401
R SA L C +L PRS G G T+R +E AA QNRF D
Sbjct: 133 RWPSAAHRRLLRCRQVL----PRSYVLAYYMFG-GGAATRREREEAAAQNRFED 181
>12_02_1110 +
26154024-26154314,26154400-26154944,26155023-26155109,
26155237-26155293,26155369-26155607,26155715-26155833,
26155945-26156031,26156117-26156194
Length = 500
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 320 VRFQTKALVVVTCCRTNWTMQTCAAIQ 240
V QT AL+++T RTNW + AIQ
Sbjct: 456 VSVQTVALIIITA-RTNWDNEVMKAIQ 481
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,672,646
Number of Sequences: 37544
Number of extensions: 383708
Number of successful extensions: 1089
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -