Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120262X.Seq
         (611 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106592-4|AAK21366.1|  786|Caenorhabditis elegans Hypothetical ...    29   2.0  
AF098505-3|AAL27269.2|  578|Caenorhabditis elegans Hypothetical ...    29   2.6  
AF098505-2|AAC67416.2|  814|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z49069-1|CAA88864.1| 1696|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AF078790-7|AAC26936.1|  272|Caenorhabditis elegans Hypothetical ...    29   3.5  
U41277-8|AAA82479.1|  285|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z82271-6|CAB05213.1| 1091|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z73102-19|CAA97421.1| 1091|Caenorhabditis elegans Hypothetical p...    27   8.0  

>AF106592-4|AAK21366.1|  786|Caenorhabditis elegans Hypothetical
           protein D1037.1 protein.
          Length = 786

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = -1

Query: 521 GHFISPESTFRRREKNTHRAKRRANPTS*RT--CRNPKPFQRP 399
           G   S ES  R R ++THR +RR+   S R+   RN +P +RP
Sbjct: 257 GRRTSKESRRRSRSRDTHRTRRRSPERSRRSTETRNERP-ERP 298


>AF098505-3|AAL27269.2|  578|Caenorhabditis elegans Hypothetical
           protein Y71H10A.1b protein.
          Length = 578

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 237 AIASTAHFCFVPWWP 193
           A+AS A FCF+P WP
Sbjct: 47  ALASEADFCFIPEWP 61


>AF098505-2|AAC67416.2|  814|Caenorhabditis elegans Hypothetical
           protein Y71H10A.1a protein.
          Length = 814

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 237 AIASTAHFCFVPWWP 193
           A+AS A FCF+P WP
Sbjct: 250 ALASEADFCFIPEWP 264


>Z49069-1|CAA88864.1| 1696|Caenorhabditis elegans Hypothetical protein
            K12D12.2 protein.
          Length = 1696

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 171  AEILRVEKATRGQSKNELWTLLRLDRSTRLH-RPIRPATCYNDQRFCLE 314
            A ILR   ATRG ++ ++  LLR   S   H R +R A C    ++ ++
Sbjct: 891  ARILRDVMATRGAAEVKMLELLRSRNSAASHVRAVRAAICATSIQYTID 939


>AF078790-7|AAC26936.1|  272|Caenorhabditis elegans Hypothetical
           protein F36H12.14 protein.
          Length = 272

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -2

Query: 502 NPRSVGERKIRIGRSGVQTQRAKEHAAIQNRFNDRARNFIFYNFA 368
           N + + +   R+G   ++ Q    HA +   FN+ A+N+ FYNFA
Sbjct: 184 NAKQLNQEATRVGIKPIEIQ----HAVLP--FNNPAKNYHFYNFA 222


>U41277-8|AAA82479.1|  285|Caenorhabditis elegans Hypothetical
           protein C06E4.8 protein.
          Length = 285

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 299 ALLFGNAQESHVKETNGIMLDHMREIIKNKI 391
           A  FG  +   + E NG M  H+ EIIKN++
Sbjct: 122 AEFFGMNETLKIIEENGDMYGHLTEIIKNRM 152


>Z82271-6|CAB05213.1| 1091|Caenorhabditis elegans Hypothetical
           protein F54E12.2 protein.
          Length = 1091

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -2

Query: 553 SAPRSCLGNCTDILFHRNPRSVGERKIRIGRS-GVQTQRAKEHAAIQNRFNDRARNFIFY 377
           + P S   +CT+      P+S      R+G S G     ++ H +     +DR+R+F+ Y
Sbjct: 61  NTPSSTASHCTNSFATSTPKSKSNASTRLGSSYGSSRSSSQNHES-----HDRSRSFVQY 115

Query: 376 N 374
           +
Sbjct: 116 D 116


>Z73102-19|CAA97421.1| 1091|Caenorhabditis elegans Hypothetical
           protein F54E12.2 protein.
          Length = 1091

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -2

Query: 553 SAPRSCLGNCTDILFHRNPRSVGERKIRIGRS-GVQTQRAKEHAAIQNRFNDRARNFIFY 377
           + P S   +CT+      P+S      R+G S G     ++ H +     +DR+R+F+ Y
Sbjct: 61  NTPSSTASHCTNSFATSTPKSKSNASTRLGSSYGSSRSSSQNHES-----HDRSRSFVQY 115

Query: 376 N 374
           +
Sbjct: 116 D 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,152,835
Number of Sequences: 27780
Number of extensions: 331658
Number of successful extensions: 984
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)