Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120262X.Seq
         (611 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02890.1 68416.m00284 PHD finger protein-related contains low...    29   1.8  
At5g48560.1 68418.m06005 basic helix-loop-helix (bHLH) family pr...    28   4.2  
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide...    28   5.6  
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide...    28   5.6  
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide...    28   5.6  
At4g19020.1 68417.m02803 chromomethylase 2 (CMT2) nearly identic...    27   7.4  
At1g72040.1 68414.m08327 deoxynucleoside kinase family contains ...    27   7.4  

>At3g02890.1 68416.m00284 PHD finger protein-related contains low
           similarity to PHD-finger domain proteins
          Length = 963

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = -2

Query: 577 CRSPTRHASAPRSCLGNCTDILFHRNP---RSVGERKIRIGRSGVQTQRAKEHAAIQNRF 407
           C +P ++   P SC+    D   H NP   +S+ +R +   +S ++ + AKE  A     
Sbjct: 808 CSNPPKNTPLPASCVSPNRDTFRHENPSNKKSLTDRTLSRMQSCMKEEDAKEGKACSGTE 867

Query: 406 NDRA 395
            + A
Sbjct: 868 KENA 871


>At5g48560.1 68418.m06005 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 498

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 560 TRICSTVVSR*LYGHFISPESTFRRREKNTHRAKRRANPTS 438
           TR+ ST   + L    ++P   F R+ K+  + K + NP S
Sbjct: 196 TRVSSTPALKALVSPEVTPGGEFSRKRKSVPKGKSKENPIS 236


>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
           identical to UBP1 interacting protein 2a [Arabidopsis
           thaliana] GI:19682816; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 478

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 337 RNQRHHVRPHARNYKK*NYERGR*NGFG 420
           + Q+HH  PHA  Y    Y+R   NG+G
Sbjct: 328 KQQQHHHNPHA--YNNPRYQRNDNNGYG 353


>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
           identical to UBP1 interacting protein 2a [Arabidopsis
           thaliana] GI:19682816; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 478

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 337 RNQRHHVRPHARNYKK*NYERGR*NGFG 420
           + Q+HH  PHA  Y    Y+R   NG+G
Sbjct: 328 KQQQHHHNPHA--YNNPRYQRNDNNGYG 353


>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
           identical to UBP1 interacting protein 2a [Arabidopsis
           thaliana] GI:19682816; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 478

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 337 RNQRHHVRPHARNYKK*NYERGR*NGFG 420
           + Q+HH  PHA  Y    Y+R   NG+G
Sbjct: 328 KQQQHHHNPHA--YNNPRYQRNDNNGYG 353


>At4g19020.1 68417.m02803 chromomethylase 2 (CMT2) nearly identical
           to chromomethylase CMT2 [Arabidopsis thaliana]
           GI:14583094
          Length = 1295

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 25/80 (31%), Positives = 31/80 (38%)
 Frame = +2

Query: 89  CENDRVESSAVVSLAFKQRYSSKTFGSCRDFTCRKGHQGTKQK*AVDAIAFGSQHTSASS 268
           CE D + SS    L F      KT   CRD T  K           D I   S   S + 
Sbjct: 350 CEGDGLVSSKQELLVFPSGCIKKTVNGCRDRTLGKPRSSGLN---TDDIHTSSLKISKND 406

Query: 269 NSSGNMLQRPALLFGNAQES 328
            S+G +    AL+  +A ES
Sbjct: 407 TSNG-LTMTTALVEQDAMES 425


>At1g72040.1 68414.m08327 deoxynucleoside kinase family contains
           Pfam profile: PF01712 deoxynucleoside kinase
          Length = 580

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -3

Query: 594 HAILAIAVPQLDT-HLLHGRVSVIVRTFYFTGIHVPSAREKYASGEAACKPN 442
           H +L+++ P L   + LH  +    R FY  G H+ S+ +K  +    C+PN
Sbjct: 453 HGVLSVSRPSLHMDNSLHPDIKD--RVFYLEGNHMHSSIQKVPALVLDCEPN 502


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,077,898
Number of Sequences: 28952
Number of extensions: 301079
Number of successful extensions: 938
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)