Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120261.Seq
         (768 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P12828 Cluster: Early 40.9 kDa protein; n=5; Nucleopoly...   225   1e-57
UniRef50_O10278 Cluster: Putative early 40.3 kDa protein; n=8; N...    93   7e-18
UniRef50_Q9ZRJ0 Cluster: Retrotransposon Tto1 DNA; n=17; Eukaryo...    35   1.9  
UniRef50_A0EYZ5 Cluster: Putative uncharacterized protein; n=1; ...    35   2.6  

>UniRef50_P12828 Cluster: Early 40.9 kDa protein; n=5;
           Nucleopolyhedrovirus|Rep: Early 40.9 kDa protein -
           Autographa californica nuclear polyhedrosis virus
           (AcMNPV)
          Length = 353

 Score =  225 bits (549), Expect = 1e-57
 Identities = 109/161 (67%), Positives = 120/161 (74%)
 Frame = +1

Query: 256 KSALKCIDFDYYGLCSKKMFCNLQTNLQKCVDQHYAELDVLTRQIYMSNPLVMLKCYQNG 435
           +SALKCIDFDYYG C+K MFCNLQTNLQKCVDQHYAELDVLTRQ+YMS+PLV+LKCYQNG
Sbjct: 69  RSALKCIDFDYYGFCAK-MFCNLQTNLQKCVDQHYAELDVLTRQVYMSDPLVVLKCYQNG 127

Query: 436 AYRLNGQIDLHLNRHIKCIKTQYNVSLIWLDLHYKLI*QAHTASTSIPTTALK*PQPRCL 615
           AYRLNGQI+LHLNRHIKCIKTQYN     +    ++   +           +K       
Sbjct: 128 AYRLNGQINLHLNRHIKCIKTQYNDEFDLVRFALQIDITSADGVDEYTDNGVKITTAPLS 187

Query: 616 STCFLSTCAIMKRPFNADRCIKNFSLLGNEYHVLVSSLQRV 738
              F     IMKRPFNADRCIKNFSL GNEYHVLVSSLQRV
Sbjct: 188 FNVFFVNVRIMKRPFNADRCIKNFSLFGNEYHVLVSSLQRV 228



 Score =  146 bits (353), Expect = 7e-34
 Identities = 69/70 (98%), Positives = 69/70 (98%)
 Frame = +2

Query: 47  MERLLNQLNLGVLPYITTKDIEDRLRDKIVAKAKLAFIKDCFEAVVCENGGLFVLTGGAA 226
           MERLLNQLNLGVLPYITTKDIEDRLRDKIVAKAKLAFIKDCFEAVVCENGGLFVLTGGAA
Sbjct: 1   MERLLNQLNLGVLPYITTKDIEDRLRDKIVAKAKLAFIKDCFEAVVCENGGLFVLTGGAA 60

Query: 227 VTCHIDDDDS 256
           VTCHIDDD S
Sbjct: 61  VTCHIDDDRS 70


>UniRef50_O10278 Cluster: Putative early 40.3 kDa protein; n=8;
           Nucleopolyhedrovirus|Rep: Putative early 40.3 kDa
           protein - Orgyia pseudotsugata multicapsid polyhedrosis
           virus (OpMNPV)
          Length = 355

 Score = 93.1 bits (221), Expect = 7e-18
 Identities = 42/68 (61%), Positives = 51/68 (75%)
 Frame = +2

Query: 47  MERLLNQLNLGVLPYITTKDIEDRLRDKIVAKAKLAFIKDCFEAVVCENGGLFVLTGGAA 226
           M+R+ +Q+  G LPYITT D+EDRLR++I AKA   F K CFEAVV +  GLFVL+GGAA
Sbjct: 1   MDRVASQIYSGALPYITTMDMEDRLRNRIAAKAGAKFFKACFEAVVADKSGLFVLSGGAA 60

Query: 227 VTCHIDDD 250
             CHI DD
Sbjct: 61  TACHIGDD 68



 Score = 83.4 bits (197), Expect = 6e-15
 Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 1/170 (0%)
 Frame = +1

Query: 256 KSALKCIDFDYYGLCSKKM-FCNLQTNLQKCVDQHYAELDVLTRQIYMSNPLVMLKCYQN 432
           ++ LKC+DFDYY    + +    LQ  LQ CV  +   L  L + + M + L ++KC+QN
Sbjct: 69  RNVLKCLDFDYYNATQEWLQLARLQQRLQACVQDNLEILSRLAQSVRMQDDLFVVKCFQN 128

Query: 433 GAYRLNGQIDLHLNRHIKCIKTQYNVSLIWLDLHYKLI*QAHTASTSIPTTALK*PQPRC 612
           GA+  NG +   L   ++ ++T +N     L    ++  +A           +   +   
Sbjct: 129 GAFCFNGPVQARLVPCVETVRTSFNGEFDLLRFALQVELKALNGVDEYVDQKVIVDRGAA 188

Query: 613 LSTCFLSTCAIMKRPFNADRCIKNFSLLGNEYHVLVSSLQRVFERPVNVL 762
           +   F      MK P   +RC++  ++ G+ Y V+VS LQ V    +  L
Sbjct: 189 VFNVFFVNIRAMKGPLTMERCVRTLAVFGDAYRVVVSPLQSVINDQIMCL 238



 Score = 53.2 bits (122), Expect = 7e-06
 Identities = 25/58 (43%), Positives = 36/58 (62%)
 Frame = +3

Query: 468 LKPPYKMHKNTVQREFDLVRFALQIDITSAYGVDEYTDNCVKITTAPLSFHVFFVNVR 641
           L P  +  + +   EFDL+RFALQ+++ +  GVDEY D  V +      F+VFFVN+R
Sbjct: 141 LVPCVETVRTSFNGEFDLLRFALQVELKALNGVDEYVDQKVIVDRGAAVFNVFFVNIR 198


>UniRef50_Q9ZRJ0 Cluster: Retrotransposon Tto1 DNA; n=17;
            Eukaryota|Rep: Retrotransposon Tto1 DNA - Nicotiana
            tabacum (Common tobacco)
          Length = 1338

 Score = 35.1 bits (77), Expect = 1.9
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = +3

Query: 90   ILRQRILKIACAIKLWLKQSWHLSKIVSKP*FAKTEVYSC*L--EARL*HAISTTTTQKR 263
            IL  RI++   A KLWL Q  ++ K++ +    KT+  SC L    RL    S +T  +R
Sbjct: 1045 ILGMRIMRDREAKKLWLSQEKYIEKVLQRFNMEKTKAVSCPLANHFRLSTKQSPSTDDER 1104

Query: 264  IKMHR 278
             KM R
Sbjct: 1105 RKMER 1109


>UniRef50_A0EYZ5 Cluster: Putative uncharacterized protein; n=1;
           Ecotropis obliqua NPV|Rep: Putative uncharacterized
           protein - Ecotropis obliqua NPV
          Length = 393

 Score = 34.7 bits (76), Expect = 2.6
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
 Frame = +2

Query: 83  LPYITTKDIEDRLRDKIVAKAKLAF---IKDCFEAVVCENGGLFVLTGGAAVTCHIDDDD 253
           LPYI+ K + D + + I+++    F   + DC E ++       ++ GGAA+  H+ DD+
Sbjct: 14  LPYISKKAVNDAMCNYILSQMPKMFYSEVYDCVERILHRQK--CIVKGGAAIAAHLQDDN 71


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 702,115,411
Number of Sequences: 1657284
Number of extensions: 13251914
Number of successful extensions: 35729
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 34423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35718
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 64204279620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)