Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120261.Seq
         (768 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    23   2.4  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    22   5.5  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   5.5  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    22   7.2  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   7.2  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   7.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   7.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   7.2  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    21   9.5  

>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 281 KSMHFNALLSRRRR 240
           K  HFN  L+RRRR
Sbjct: 25  KEFHFNRYLTRRRR 38


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 281 KSMHFNALLSRRRR 240
           K  H+N  L+RRRR
Sbjct: 25  KEFHYNRYLTRRRR 38


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 281 KSMHFNALLSRRRR 240
           K  H+N  L+RRRR
Sbjct: 287 KEFHYNRYLTRRRR 300


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 281 KSMHFNALLSRRRR 240
           K  H+N  L+RRRR
Sbjct: 25  KEFHYNHYLTRRRR 38


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 233 CHIDDDDSKAH*NA*ILIITAFAQKKCFATC 325
           C I    ++   NA +L ITAF  ++  A C
Sbjct: 127 CIIQSFAAETSANATVLTITAFTVERYIAIC 157


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 164 DCFEAVVCENGGLFVLTGGAAV 229
           DC +A+   N  L V++GG+ +
Sbjct: 425 DCLKAIKENNADLTVVSGGSVL 446


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 164 DCFEAVVCENGGLFVLTGGAAV 229
           DC +A+   N  L V++GG+ +
Sbjct: 425 DCLKAIKENNADLTVVSGGSVL 446


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 164 DCFEAVVCENGGLFVLTGGAAV 229
           DC +A+   N  L V++GG+ +
Sbjct: 425 DCLKAIKENNADLTVVSGGSVL 446


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 14/55 (25%), Positives = 30/55 (54%)
 Frame = +3

Query: 90  ILRQRILKIACAIKLWLKQSWHLSKIVSKP*FAKTEVYSC*LEARL*HAISTTTT 254
           + +++ + +  AIK W+++  H+ ++V+    A  + Y     A L H ++TT T
Sbjct: 91  LTKKQEMLVRSAIKYWVERHKHIVRLVT----AIGDAYGV---ALLLHMLTTTIT 138


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,471
Number of Sequences: 438
Number of extensions: 3525
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)