Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120260.Seq
         (395 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2DP08 Cluster: Ankyrin repeat protein, putative; n=1; ...    33   2.0  
UniRef50_A3DF49 Cluster: Single-stranded-DNA-specific exonucleas...    31   6.1  

>UniRef50_A2DP08 Cluster: Ankyrin repeat protein, putative; n=1;
           Trichomonas vaginalis G3|Rep: Ankyrin repeat protein,
           putative - Trichomonas vaginalis G3
          Length = 332

 Score = 33.1 bits (72), Expect = 2.0
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = +1

Query: 193 FFYCDSTQDLQ*CILTLKFSNRINVVKFM*NFINI*SVKPSFHSCYISLYNYIV*INNLR 372
           F Y D T D+  C+      N + +VK++   IN     P+ +SCY++     V IN+L 
Sbjct: 129 FVYLDQTGDINTCLTYSPKFNSLTLVKYL---INNGGDVPATNSCYMTALGNAVSINSLE 185

Query: 373 I 375
           I
Sbjct: 186 I 186


>UniRef50_A3DF49 Cluster: Single-stranded-DNA-specific exonuclease
           RecJ; n=1; Clostridium thermocellum ATCC 27405|Rep:
           Single-stranded-DNA-specific exonuclease RecJ -
           Clostridium thermocellum (strain ATCC 27405 / DSM 1237)
          Length = 827

 Score = 31.5 bits (68), Expect = 6.1
 Identities = 17/56 (30%), Positives = 30/56 (53%)
 Frame = -3

Query: 339 Q*NVTRVE*RLNALNINKILHEFDDIYSIGKFQSKNALLQILGRITIKKYHSFNII 172
           Q N+  V   +N      +L +FD +   G + SK+ + QI+ +I +KK + +N I
Sbjct: 662 QDNIKEVSVVVNPHPEGALLSKFDRVILFGAWMSKDYIYQIVRKIDLKKVYVYNKI 717


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 328,188,740
Number of Sequences: 1657284
Number of extensions: 5633444
Number of successful extensions: 8325
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8318
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16503508437
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)