Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120260.Seq
         (395 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   4.3  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    24   7.4  
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce...    24   9.8  
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |...    24   9.8  

>SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 255

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 273 FDDIYSIGKFQSKNALLQILGRITIKKYHSFNII 172
           F  +  I K  S+ ++L++  +  IKK+H+ NI+
Sbjct: 30  FRSLRPIQKSFSEISILRVFNKPPIKKFHNSNIL 63


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 85  LFGYYSCG*FNLFIVMSTSDQTFYR 159
           LFGY   G  +LFI+M+   Q +YR
Sbjct: 168 LFGYLRFGFLSLFIIMAVCIQ-YYR 191


>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 22  FVGISKRVNPRNIDKCYDL*ILFGYYSCG*FN 117
           +V +  + NP+N+ K     I FG   CG F+
Sbjct: 122 YVSLVHQSNPKNVSKEPPSVIRFGVKKCGMFD 153


>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +1

Query: 169 LYYVKTVIFFYCDSTQDLQ*CILTLKFSNRINVVKFM*NFINI*SVKPSFHS 324
           L Y  + IF Y D+   L+ C+L    + + ++ K + +F+ +   KP++ S
Sbjct: 113 LPYYTSKIFVYEDADTRLERCVLQRVKAEKGDLTKVLNDFVTL--SKPAYDS 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,460,364
Number of Sequences: 5004
Number of extensions: 26876
Number of successful extensions: 46
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)