Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120260.Seq
         (395 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF588656-1|ABQ96842.1|  176|Anopheles gambiae transposase protein.     22   7.1  
EF588610-1|ABQ96801.1|  176|Anopheles gambiae transposase protein.     22   7.1  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    22   7.1  

>EF588656-1|ABQ96842.1|  176|Anopheles gambiae transposase protein.
          Length = 176

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 71  MICRSCLDITVVASLIY 121
           +IC+ CL   +V S+I+
Sbjct: 114 LICKECLPFNLVESVIF 130


>EF588610-1|ABQ96801.1|  176|Anopheles gambiae transposase protein.
          Length = 176

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 71  MICRSCLDITVVASLIY 121
           +IC+ CL   +V S+I+
Sbjct: 114 LICKECLPFNLVESVIF 130


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 178 VKTVIFFYCDSTQDL 222
           V+ +I F C+STQD+
Sbjct: 469 VRDLIAFTCESTQDM 483


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 360,210
Number of Sequences: 2352
Number of extensions: 6473
Number of successful extensions: 213
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 31212099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)