Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120260.Seq
         (395 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   3.9  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    20   9.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    20   9.0  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 248 NFRVRMHYCKSWVESQ 201
           +FRV M   +SW+ES+
Sbjct: 31  DFRVDMFVRQSWIESR 46


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 77  CRSCLDITVVASLIYLL*C 133
           CR+C+  TV + L +L  C
Sbjct: 35  CRNCIHPTVFSVLFWLGYC 53


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 77  CRSCLDITVVASLIYLL*C 133
           CR+C+  TV + L +L  C
Sbjct: 483 CRNCIHPTVFSVLFWLGYC 501


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,956
Number of Sequences: 438
Number of extensions: 1801
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)