Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120259.Seq
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...   127   1e-30
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    27   2.1  
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch...    27   2.8  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   3.7  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    26   4.9  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    26   4.9  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    26   6.4  
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    25   8.5  
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    25   8.5  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    25   8.5  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   8.5  

>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score =  127 bits (307), Expect = 1e-30
 Identities = 60/86 (69%), Positives = 72/86 (83%)
 Frame = +3

Query: 252 QYESLTDPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKAFM 431
           +Y+SL+DP  LD+ K+L+I+I P+K    L+I DTGIGMTK DL+NNLG IAKSGTK FM
Sbjct: 47  RYQSLSDPHALDAEKDLFIRITPDKENKILSIRDTGIGMTKNDLINNLGVIAKSGTKQFM 106

Query: 432 EALQAGADISMIGQFGVGFYSSYLVA 509
           EA  +GADISMIGQFGVGFYS+YLVA
Sbjct: 107 EAAASGADISMIGQFGVGFYSAYLVA 132



 Score =   99 bits (238), Expect = 3e-22
 Identities = 48/77 (62%), Positives = 60/77 (77%), Gaps = 1/77 (1%)
 Frame = +2

Query: 509 DRVTVHSKHNDDEQYVWESSAGGSFTVRPDSGEP-LGRGTKIVLHVKEDLAEFMEEHKIT 685
           D+V V SKHNDDEQY+WESSAGGSFTV  D+  P L RGT+I L +KED  +++EE  I 
Sbjct: 133 DKVQVVSKHNDDEQYIWESSAGGSFTVTLDTDGPRLLRGTEIRLFMKEDQLQYLEEKTIK 192

Query: 686 EIVKKHSQFIGYPIKLM 736
           + VKKHS+FI YPI+L+
Sbjct: 193 DTVKKHSEFISYPIQLV 209



 Score = 77.0 bits (181), Expect = 3e-15
 Identities = 37/45 (82%), Positives = 41/45 (91%)
 Frame = +1

Query: 118 AEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKI 252
           +  ETF F+AEI+QLMSLIINT YSNKEIFLRELISN+SDALDKI
Sbjct: 2   SNTETFKFEAEISQLMSLIINTVYSNKEIFLRELISNASDALDKI 46


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 20/53 (37%), Positives = 30/53 (56%)
 Frame = -2

Query: 427 KALVPDFAMVPKLFTKSALVIPIPVSMIVRVPSFLLGMILMYSSLPLSSFDGS 269
           KA++P F      +  +AL+ PI ++ I    +F+   IL + S PLS FDGS
Sbjct: 486 KAVIPIFTNQVS-YINNALIRPI-IAYINSTRTFI--PILCHVSKPLSDFDGS 534


>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 641 VKEDLAEFMEEHKITEIVKKHSQFIGY 721
           ++ D++EF E+H I  ++     +IGY
Sbjct: 564 IRFDMSEFQEKHTIARLIGSPPGYIGY 590


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 19/69 (27%), Positives = 34/69 (49%)
 Frame = +3

Query: 525 TLNTMTTSNTCGNLLQEARSQSAQTAVSPLVEVQRSSFTSKRTWQNSWKNTKSQRS*RNI 704
           T +++ +S+T  + L  +   S+  A S +     SS  S  T  +S  ++ +  +    
Sbjct: 115 TSSSLASSSTTSSSLASSSITSSSLASSSITS---SSLASSSTTSSSLASSSTNSTTSAT 171

Query: 705 PSSSATQSS 731
           P+SSAT SS
Sbjct: 172 PTSSATSSS 180


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 404 DGSQIVHQIGLGHTNTGIDDRKSALVLVGNDLDVQL 297
           DG   V  I  G     +DDR+  L+ + NDL+V L
Sbjct: 2   DGKPQVEVIVNGQVVPNLDDREYRLIKLENDLEVLL 37


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 491 LQLLGRDRVTVHSKHNDDEQYVWESSA 571
           L+L   D+V +   HN    YVW+S++
Sbjct: 315 LELKRSDKVPIECTHNFSVDYVWKSTS 341


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 266 HGSVKTR*WQRAVHQDHSQ-QERGHSYDHRYRYWYDQGRFGEQF 394
           H S K    +R+   D +  +ER H+  +R+R  YD G F + +
Sbjct: 193 HSSDKREHSRRSYRNDRNNWRERTHNDRYRHRDKYDSGYFKKHY 236


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +2

Query: 308 QDHSQQERGHSYDHRYRYWYDQGRFGEQF 394
           +DH++++  H+     +Y YD  R  E +
Sbjct: 603 KDHTKEQAWHAMQQGIKYMYDNWRIWENY 631


>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 6/27 (22%), Positives = 19/27 (70%)
 Frame = +2

Query: 641 VKEDLAEFMEEHKITEIVKKHSQFIGY 721
           ++ D++E+ME+H ++ ++     ++G+
Sbjct: 646 IRIDMSEYMEKHSVSRLIGAPPGYVGH 672


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/64 (21%), Positives = 31/64 (48%)
 Frame = +1

Query: 91  MPEEMETQPAEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKISMNLSR 270
           + E++  + A+ E+F      A+L    +N    NKE  + +L +  S+   ++    S+
Sbjct: 762 LTEKLNKKNADTESFKNTIREAELSKKALNDNLGNKENIISDLKNKLSEESTRLQELQSQ 821

Query: 271 IRQN 282
           + Q+
Sbjct: 822 LNQD 825


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +3

Query: 270  DPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLG 398
            DPSK     ++Y K+   + +  L   D+GI ++   L+  +G
Sbjct: 2472 DPSKAVRKPKIYSKVSTEERDFNLEQFDSGIDLSVKFLLEGIG 2514


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,177,761
Number of Sequences: 5004
Number of extensions: 70656
Number of successful extensions: 241
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)