Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120259.Seq
         (737 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)                      128   6e-30
SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)                       81   7e-16
SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)                    76   3e-14
SB_23993| Best HMM Match : SRCR (HMM E-Value=0.0036)                   31   1.3  
SB_51568| Best HMM Match : RNA_pol_Rpa2_4 (HMM E-Value=2.3)            29   3.0  
SB_45558| Best HMM Match : DUF718 (HMM E-Value=2.4)                    29   3.0  
SB_45717| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_11623| Best HMM Match : ABC1 (HMM E-Value=0)                        29   3.9  
SB_33628| Best HMM Match : BRF1 (HMM E-Value=1.8)                      29   5.2  
SB_26758| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40)                 28   9.1  
SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_15630| Best HMM Match : p450 (HMM E-Value=0)                        28   9.1  

>SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 581

 Score =  128 bits (308), Expect = 6e-30
 Identities = 55/76 (72%), Positives = 68/76 (89%)
 Frame = +2

Query: 509 DRVTVHSKHNDDEQYVWESSAGGSFTVRPDSGEPLGRGTKIVLHVKEDLAEFMEEHKITE 688
           ++V V +KHNDDEQY+WES+AGGSFTV+ DSGEPLGRGTKIVL++KED  E++EE +I E
Sbjct: 82  EKVVVTTKHNDDEQYIWESAAGGSFTVKRDSGEPLGRGTKIVLYLKEDQTEYLEEKRIKE 141

Query: 689 IVKKHSQFIGYPIKLM 736
           IVKKHSQFIGYP+ L+
Sbjct: 142 IVKKHSQFIGYPLSLL 157



 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 21/23 (91%), Positives = 23/23 (100%)
 Frame = +3

Query: 441 QAGADISMIGQFGVGFYSSYLVA 509
           +AGADISMIGQFGVGFYS+YLVA
Sbjct: 59  KAGADISMIGQFGVGFYSAYLVA 81


>SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 855

 Score = 81.4 bits (192), Expect = 7e-16
 Identities = 40/76 (52%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
 Frame = +2

Query: 509 DRVTVHSKHNDDEQYVWESSAGGSFTVRPD-SGEPLGRGTKIVLHVKEDLAEFMEEHKIT 685
           DRV V SK+NDD+QY+WES A  SF++  D  G  L RGT I LH+KE+  +++E   I 
Sbjct: 177 DRVIVTSKNNDDKQYIWESDA-SSFSISEDPRGPTLKRGTTISLHLKEEARDYLEPETIK 235

Query: 686 EIVKKHSQFIGYPIKL 733
           ++VKK+SQFI +PI L
Sbjct: 236 DLVKKYSQFINFPIFL 251



 Score = 67.7 bits (158), Expect = 9e-12
 Identities = 34/55 (61%), Positives = 39/55 (70%)
 Frame = +3

Query: 261 SLTDPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKA 425
           SLTD +  DSG EL IKI  +K    L + DTGIGMTK +L+ NLGTIAKSGT A
Sbjct: 122 SLTDKTAFDSGDELSIKIKADKENNILHVTDTGIGMTKEELIKNLGTIAKSGTIA 176



 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 32/53 (60%), Positives = 40/53 (75%)
 Frame = +1

Query: 100 EMETQPAEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKISM 258
           +M+    + E   FQAE+ ++M LIIN+ Y NKEIFLRELISNSSDALDKI +
Sbjct: 68  QMKELRDKAEKHEFQAEVNRMMKLIINSLYRNKEIFLRELISNSSDALDKIRL 120


>SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)
          Length = 739

 Score = 76.2 bits (179), Expect = 3e-14
 Identities = 41/85 (48%), Positives = 57/85 (67%), Gaps = 3/85 (3%)
 Frame = +3

Query: 264 LTDPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKAFMEALQ 443
           LT     ++   L I I  ++  GT TI D G+GMT+ +L+++LG IAKSG+K FME L+
Sbjct: 106 LTGKDVSETETSLEIMIETDQEAGTFTIQDNGVGMTEEELMDHLGVIAKSGSKVFMEKLK 165

Query: 444 AGADIS---MIGQFGVGFYSSYLVA 509
             A  S   +IGQFGVGFYS+++VA
Sbjct: 166 NEARSSHENIIGQFGVGFYSTFMVA 190



 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
 Frame = +2

Query: 509 DRVTVHSK--HNDDEQYVWESSAGGSFTVRPDSGEPLGRGTKIVLHVKEDLAEFMEEHKI 682
           D+V V++K    + + Y W S   GS+     +G  + RGTK+VLH+KED   F  +  +
Sbjct: 191 DKVDVYTKSYQPNSQGYFWTSDGSGSYEYAEANG--VARGTKLVLHLKEDCKRFAMKTAV 248

Query: 683 TEIVKKHSQFIGYPIKL 733
            +IV+++S F+G+PI L
Sbjct: 249 EDIVQRYSNFVGFPIYL 265



 Score = 33.1 bits (72), Expect = 0.24
 Identities = 15/59 (25%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
 Frame = +1

Query: 79  AVKKMPEEMETQPAEVETFAFQAEIAQLMSLIINTFYSN-KEIFLRELISNSSDALDKI 252
           +V+ + E  + +  E  +     ++ + + L++++  +   ++F+RE+ISN+SDAL+K+
Sbjct: 43  SVRLLSETTDDRSVEESSETSGEDVEEPLELLMSSQKTKLSQVFIREVISNASDALEKV 101


>SB_23993| Best HMM Match : SRCR (HMM E-Value=0.0036)
          Length = 189

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/73 (24%), Positives = 32/73 (43%)
 Frame = +2

Query: 392 FGNHREIWY*SFHGGSSSRCRHQHDWTVRCWLLLQLLGRDRVTVHSKHNDDEQYVWESSA 571
           +G+ REI   +    +   C H  D TV+C +  +++ +   T     ND E     +  
Sbjct: 20  YGSEREIASCNRSNWAQPTCNHSRDVTVQCKIRPEMIPKSTPTDPRTRNDCEASPKSTPR 79

Query: 572 GGSFTVRPDSGEP 610
             +  +  DSG+P
Sbjct: 80  NYNHRLVDDSGDP 92


>SB_51568| Best HMM Match : RNA_pol_Rpa2_4 (HMM E-Value=2.3)
          Length = 375

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 22/69 (31%), Positives = 33/69 (47%)
 Frame = +1

Query: 46  PSSHFV*IKQKAVKKMPEEMETQPAEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELIS 225
           PS   V    KA  K  +E ET+P E+   +F+ +   ++        S+  +FLR  I 
Sbjct: 71  PSGSSVSESGKAKTKKEKEKETKPFEIALVSFEEDEFPMI-------LSDDSLFLRGFIQ 123

Query: 226 NSSDALDKI 252
             SDA +KI
Sbjct: 124 LRSDASEKI 132


>SB_45558| Best HMM Match : DUF718 (HMM E-Value=2.4)
          Length = 393

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 29/152 (19%), Positives = 64/152 (42%), Gaps = 3/152 (1%)
 Frame = +2

Query: 266 HGSVKTR*WQRAVHQDHSQQERGHSY--DHRYRYWYDQGRFGEQFGNHREIWY*SFHGGS 439
           HG V+T  WQ  + +   ++ +   Y  +H+   +  + +  +    H+   Y   H   
Sbjct: 62  HGKVQTNTWQIFLQEKSKREHQAFQYLKEHQVFQYLKERQVFQYLKEHQVFQYLKEHQVF 121

Query: 440 SSRCRHQHDWTVRCWLLLQLLGRDRVTVHSKHNDDEQYVWESSAGGSFTVRPDSGEPLGR 619
               +HQ    ++   + Q L   +V  + K     QY+ E        +R        +
Sbjct: 122 QYLKKHQVFQYLKEHQVFQHLKEHQVFQYLKELQVLQYLKEHQVFQY--LREHQVFQYLK 179

Query: 620 GTKIVLHVKE-DLAEFMEEHKITEIVKKHSQF 712
             ++  ++KE  L ++++EH++ + +K+H  F
Sbjct: 180 EHQVFQYLKEHQLFQYLKEHQVFQYLKEHQVF 211


>SB_45717| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 721

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/57 (21%), Positives = 31/57 (54%)
 Frame = +3

Query: 276 SKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKAFMEALQA 446
           +K+  G+E+   +  ++NE     ++  +G ++ D++ N+G      T++ +E  +A
Sbjct: 265 AKISDGQEIKFSVFIDENEYRSICLNLQVGPSEPDVLKNIGVTRMPETRSNVENCRA 321


>SB_11623| Best HMM Match : ABC1 (HMM E-Value=0)
          Length = 780

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
 Frame = +2

Query: 299 AVHQDHSQQERGHSYDHRYRYWYDQ----GRFGEQFGNHREIWY*SFHGGSSSRCRHQHD 466
           AV   H+   RGHS+      W       G F + FG+    W    + G+S  CR    
Sbjct: 150 AVGVPHAHSYRGHSFRRGATTWAFHLGIPGEFIQVFGD----WASDAYRGNSL-CRANCQ 204

Query: 467 WTVRCWLLLQ 496
           W +RC ++ Q
Sbjct: 205 WLIRCVVIFQ 214


>SB_33628| Best HMM Match : BRF1 (HMM E-Value=1.8)
          Length = 369

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -1

Query: 524 EQSRGRDQVTGVEANTELSNHADVGTCLKSLHESFSTRFRDGSQIVHQ 381
           E+ RGRD+V GV    E       G  LK+LHE    +  +  + +HQ
Sbjct: 40  EEKRGRDEVEGVAKVYETVQRQ--GAELKALHEEAKKKQAEYQEWLHQ 85


>SB_26758| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40)
          Length = 1413

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +1

Query: 121 EVETFAF-QAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKISMNLSRI 273
           E ETF+   A I    S+++N FY+      R L+ N++   D+I + L+ I
Sbjct: 577 ERETFSITSANIGGNDSIVVNLFYNVTLELRRTLLQNNNVRKDRIQIRLNLI 628


>SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1276

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 554 VWESSAGGSFTVRPDSGEPLGRGTKIVLHVKEDLAE 661
           VW SSA G+  ++ +  E L   T   +  K+++AE
Sbjct: 528 VWSSSASGANMIQGEPAEHLAEATAAPITKKDEIAE 563


>SB_15630| Best HMM Match : p450 (HMM E-Value=0)
          Length = 965

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 19/84 (22%), Positives = 34/84 (40%)
 Frame = +3

Query: 243 RQNQYESLTDPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTK 422
           +Q  + S    +K D    +   + P  +   + ++   I  +   L+N L  IA SGT 
Sbjct: 125 QQEPFNSFMTRAKYDKWHRIRTSLSPAFSAHKMKLMVPLINSSCDVLINKLTKIADSGTS 184

Query: 423 AFMEALQAGADISMIGQFGVGFYS 494
            F+     G  +  I +   G +S
Sbjct: 185 FFVHKFHQGLTMDTILKTAFGIHS 208


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,074,948
Number of Sequences: 59808
Number of extensions: 557033
Number of successful extensions: 1818
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1805
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)