Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120258.Seq
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|c...    29   0.54 
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3...    29   0.71 
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    26   5.0  
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|...    26   6.6  
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    26   6.6  

>SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 429

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -2

Query: 742 GHSGVFSFKHSGGLKESRKFLSSLKVFTLAESLGGYESLAELP 614
           G+  V SF   GG  +SRK +++LK+ +   ++G  ++L   P
Sbjct: 341 GYGAVLSFGAKGGPDQSRKVVNALKLASQLANVGDAKTLVIAP 383


>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 449

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 202 SLINKQRHIFTVLTQTILMELMQEIICVAYKPKQNT 309
           SL N Q+H++ VLTQ + +     + C  +K  + T
Sbjct: 217 SLSNYQQHLYQVLTQNVSLRFCSRLQCSFHKYDEKT 252


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 185 HYDKTIVVVFNCYFLWALKLSKAQPSLYLPLRTTE 81
           H DK  +  FN Y+L A++   +  SL L  R +E
Sbjct: 347 HQDKKDLETFNPYYLNAIESESSSQSLSLSQRASE 381


>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -1

Query: 164 VVFNCYFLWALKLSKAQ-PSLY 102
           VVFNC  LWA KL   + P +Y
Sbjct: 183 VVFNCTGLWASKLGGVEDPDVY 204


>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = -2

Query: 742 GHSGVFSFKHSGGLKESRKFLSSLKVFTLAESLGGYESLAELP*VQKLIHDSITPL 575
           G   V  + H+ GL +      + K  TLAE+L G++ LAE    QK+I     P+
Sbjct: 360 GIPSVLKYLHAEGLIDGSNITVTGK--TLAENLRGFKDLAE---GQKIIRPLSNPI 410


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,873,937
Number of Sequences: 5004
Number of extensions: 54745
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)