Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120258.Seq
         (752 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0129 - 14684003-14684123,14684205-14684323,14684406-146845...    37   0.020
06_01_0963 + 7411944-7412396,7412677-7412736,7412828-7413010,741...    35   0.060
10_07_0109 + 12952293-12952952,12953049-12953402,12953494-129538...    34   0.14 
10_07_0106 - 12933918-12934041,12934164-12934486,12934584-129349...    34   0.14 
10_07_0105 + 12922828-12923448,12923554-12923907,12924008-129243...    31   0.98 
11_01_0459 + 3546101-3548771,3548871-3549238                           28   9.2  

>03_03_0129 -
           14684003-14684123,14684205-14684323,14684406-14684501,
           14684605-14684712,14684974-14685060,14685135-14685338,
           14685429-14685488,14686096-14686264,14686400-14686473,
           14686586-14686897,14687054-14687212
          Length = 502

 Score = 36.7 bits (81), Expect = 0.020
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = -2

Query: 742 GHSGVFSFKHSGGLKESRKFLSSLKVFTLAESLGGYESLAELP 614
           G  GV SF+ +G    +R+F+ S+K+   A S GG ES+ + P
Sbjct: 415 GFGGVISFEVAGDFDATRRFIDSVKIPYHAPSFGGCESIIDQP 457


>06_01_0963 +
           7411944-7412396,7412677-7412736,7412828-7413010,
           7413259-7413339,7414219-7414541,7414961-7415084
          Length = 407

 Score = 35.1 bits (77), Expect = 0.060
 Identities = 16/43 (37%), Positives = 28/43 (65%)
 Frame = -2

Query: 742 GHSGVFSFKHSGGLKESRKFLSSLKVFTLAESLGGYESLAELP 614
           G  GV SF+ +  ++ + +F+ +L++  +A SLGG ESL + P
Sbjct: 319 GAGGVISFEVASDMRGAMRFVDALELPFIATSLGGCESLVQQP 361


>10_07_0109 +
           12952293-12952952,12953049-12953402,12953494-12953816,
           12953939-12954062
          Length = 486

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = -2

Query: 742 GHSGVFSFKHSGGLKESRKFLSSLKVFTLAESLGGYESLAELP 614
           G  GV SF  +  L+   +F+ +L++  +A SLGG ESL + P
Sbjct: 398 GAGGVVSFDVASDLRGVMRFVDALELPLIATSLGGCESLVQQP 440


>10_07_0106 -
           12933918-12934041,12934164-12934486,12934584-12934937,
           12935029-12935646
          Length = 472

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 16/43 (37%), Positives = 27/43 (62%)
 Frame = -2

Query: 742 GHSGVFSFKHSGGLKESRKFLSSLKVFTLAESLGGYESLAELP 614
           G  GV SF+ +  ++   +F+ +L++  +A SLGG ESL + P
Sbjct: 384 GAGGVVSFEVASDMRGVMRFVDALELPLIATSLGGCESLVQQP 426


>10_07_0105 +
           12922828-12923448,12923554-12923907,12924008-12924330,
           12928324-12928401,12928760-12928883
          Length = 499

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = -2

Query: 742 GHSGVFSFKHSGGLKESRKFLSSLKVFTLAESLGGYESLAELP 614
           G  GV   + +  ++ + +F+ +L++  +A SLGG ESL + P
Sbjct: 385 GAGGVVGLEVASDMRGAMRFVDALELPLIATSLGGCESLVQQP 427


>11_01_0459 + 3546101-3548771,3548871-3549238
          Length = 1012

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -2

Query: 676 SLKVFTLAESLGGYES-LAELP*VQKLIHDSITPLFFLC 563
           ++KVF L E+ G  ES +AE   ++ L H ++ P+F LC
Sbjct: 728 AVKVFNL-ETSGSQESFIAECNALRNLRHRNLVPIFTLC 765


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,722,837
Number of Sequences: 37544
Number of extensions: 290917
Number of successful extensions: 446
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)