Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120258.Seq
         (752 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15457| Best HMM Match : CPSase_L_D2 (HMM E-Value=0)                 32   0.43 
SB_54172| Best HMM Match : Sulfatase (HMM E-Value=0.00035)             29   5.4  
SB_4686| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.4  

>SB_15457| Best HMM Match : CPSase_L_D2 (HMM E-Value=0)
          Length = 295

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = -3

Query: 138 GVEII*GTTKPLPSAKDYRAFEEEHVIEI 52
           GV ++ GT +P+ +A+D RAF EEH + +
Sbjct: 15  GVPVVPGTAEPIGNAEDARAFCEEHGLPV 43


>SB_54172| Best HMM Match : Sulfatase (HMM E-Value=0.00035)
          Length = 492

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 231 HSTYPNNFNGTDARNNM 281
           HS+Y NNF G D R+NM
Sbjct: 33  HSSYENNFWGVDLRDNM 49


>SB_4686| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 641

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 231 HSTYPNNFNGTDARNNM 281
           HS+Y NNF G D R+NM
Sbjct: 182 HSSYENNFWGVDLRDNM 198


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,230,639
Number of Sequences: 59808
Number of extensions: 369283
Number of successful extensions: 578
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)