Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120258.Seq
         (752 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58758-12|AAB93432.1|  392|Caenorhabditis elegans Hypothetical p...    66   3e-11
Z83106-5|CAB05492.1|  392|Caenorhabditis elegans Hypothetical pr...    60   2e-09
Z81467-4|CAB03873.2|  451|Caenorhabditis elegans Hypothetical pr...    28   6.2  

>U58758-12|AAB93432.1|  392|Caenorhabditis elegans Hypothetical
           protein ZK1127.10 protein.
          Length = 392

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 33/43 (76%), Positives = 36/43 (83%)
 Frame = -2

Query: 742 GHSGVFSFKHSGGLKESRKFLSSLKVFTLAESLGGYESLAELP 614
           G SG+ SF   G L+ESR FLS+LKVFTLAESLGGYESLAELP
Sbjct: 300 GMSGMISFYLKGELQESRAFLSALKVFTLAESLGGYESLAELP 342


>Z83106-5|CAB05492.1|  392|Caenorhabditis elegans Hypothetical
           protein F22B8.6 protein.
          Length = 392

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 31/43 (72%), Positives = 34/43 (79%)
 Frame = -2

Query: 742 GHSGVFSFKHSGGLKESRKFLSSLKVFTLAESLGGYESLAELP 614
           G SG+ SF   G L +SR FLS+LKVFTLAESLGG ESLAELP
Sbjct: 300 GMSGMISFYLKGELCQSRAFLSALKVFTLAESLGGCESLAELP 342


>Z81467-4|CAB03873.2|  451|Caenorhabditis elegans Hypothetical
           protein C12C8.2a protein.
          Length = 451

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = -2

Query: 736 SGVFSFKHSGGLKESRKFLSSLKVFTLAESLGGYESLAELP 614
           +G+ +F   G  + + K + SLK+   A SLGG ESL E P
Sbjct: 366 AGMIAFD-VGTAENAIKLVESLKLIIHAVSLGGTESLIEHP 405


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,529,933
Number of Sequences: 27780
Number of extensions: 293872
Number of successful extensions: 616
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)