Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120257.Seq
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    27   2.5  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    27   2.5  
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    27   3.2  
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    27   3.2  
SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom...    27   4.3  
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo...    27   4.3  
SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual             26   7.5  
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    26   7.5  
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    25   9.9  

>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +2

Query: 422 DVIAKIDDLTQKLTVANAD 478
           D  +KID LT+KL VANA+
Sbjct: 618 DSASKIDSLTEKLKVANAE 636


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +2

Query: 275 LITKSGVIQLIMKSKLPYAIELQEWLL 355
           L+ K GV+ L+ K KLP+++  ++ ++
Sbjct: 542 LLVKDGVVHLVDKVKLPFSVSQKDMII 568


>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
 Frame = +1

Query: 208 SSTMLQIAWQSRATR*FAPTHSAHYQIWRDSTDNEVQIALRH--RITRMAF------GGG 363
           + T+  + W  R T     TH+   +IW  +T  + +    H  R+  +++       GG
Sbjct: 291 TDTVTSLRWVQRGTHLAVGTHNGSVEIWDAATCKKTRTMSGHTERVGALSWNDHVLSSGG 350

Query: 364 HSSSAMHGQVRA 399
             +  +H  VRA
Sbjct: 351 RDNHILHRDVRA 362


>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -2

Query: 104 HKSDWLLITEHVS*RERVFAKFKFSNFNLSHFNL 3
           +K  W+L+   +      F  ++F++FNL++FN+
Sbjct: 272 YKEYWVLLLFPMFFSSNWFTTYQFNDFNLAYFNI 305


>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 437

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = -1

Query: 516 VGNKMSDRLASAKSALATVNFCVRSSILAI-----TSFVSISTAGAYLPVHST*GMT 361
           V   + DRL SA+S   T   C+ ++ LA      T +VS  T G +  V S  G+T
Sbjct: 124 VYESIKDRLVSAQSISGTGALCIAANFLASFYPSKTIYVSDPTWGNHKNVFSRAGLT 180


>SPAC9E9.10c |cbh1|cbh|centromere binding protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 514

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +2

Query: 470 NADLAEANRSLILLPTK*LWLDATLKRLGKIAKTRAAK 583
           N DL+++  S IL P K  +LD    RLG I K RA K
Sbjct: 41  NKDLSQSTISEILSP-KYSYLDDGSVRLGDIKKIRAPK 77


>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 264

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 704 CARKNDRWAAA*NDW 748
           C RK++RW AA N W
Sbjct: 140 CRRKDNRWFAAINKW 154


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 139 IVNGQYVSTSTASTNRRLSMPTKSSTMLQIAWQSRAT 249
           I  G Y STS +ST+   + P+ SST    +  S +T
Sbjct: 129 ISGGIYSSTSASSTSSSTATPSSSSTTSSSSSSSSST 165


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 78  GDEQPVRFVAKDIASSLKYVNCERAIRVHVDGKYKSTFEHAD 203
           GDE     V+ D  S    V+  +   ++  GKY+ TF H D
Sbjct: 48  GDEIECIVVSMDDKSKKARVSLRQEDILNALGKYEETFRHVD 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,424,961
Number of Sequences: 5004
Number of extensions: 71738
Number of successful extensions: 199
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)