Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120257.Seq
(828 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0198 - 28359092-28359457,28359574-28359729,28359844-283600... 31 1.1
03_01_0537 + 4029790-4029827,4030048-4030171,4030491-4030754,403... 30 2.0
07_01_0375 - 2790287-2790675,2790843-2793783 29 3.4
11_01_0605 + 4821363-4823246 29 4.5
09_03_0090 + 12292125-12292427,12293848-12294608,12295170-12295668 29 4.5
04_01_0157 + 1795597-1795791,1796254-1796280 29 6.0
03_02_0982 + 12925861-12926211,12926309-12926378,12927190-129272... 29 6.0
09_04_0247 + 16030543-16031324,16032812-16033088,16033374-160335... 28 7.9
07_01_0332 - 2345980-2346566,2346715-2348262,2349214-2350279 28 7.9
02_05_0612 + 30348495-30348995,30349679-30350023 28 7.9
>05_07_0198 -
28359092-28359457,28359574-28359729,28359844-28360011,
28360082-28360206,28360288-28360405,28360491-28360718,
28360959-28361099,28361433-28361498,28361770-28361862,
28361965-28362225
Length = 573
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/74 (28%), Positives = 32/74 (43%)
Frame = -2
Query: 635 LAITSCAMSAMRLASCAVSRRAFSQSCRAVSASRRATIISLATK*AIGWLPPNLRWPPSI 456
LA + A A AVS +C ++A RRA +A A+G P+L + S+
Sbjct: 15 LAAAAAAAPKAPTAPAAVSFPVSHAACAPLAARRRAVTAMVAAPPAVGAAMPSLDFDTSV 74
Query: 455 FASDRQFWQ*HHLY 414
F ++ H Y
Sbjct: 75 FNKEKVSLAGHEEY 88
>03_01_0537 +
4029790-4029827,4030048-4030171,4030491-4030754,
4030847-4030978,4031068-4031184,4031687-4031963,
4037100-4037137
Length = 329
Score = 30.3 bits (65), Expect = 2.0
Identities = 23/66 (34%), Positives = 36/66 (54%)
Frame = +2
Query: 395 APAVEMDTNDVIAKIDDLTQKLTVANADLAEANRSLILLPTK*LWLDATLKRLGKIAKTR 574
A + D V +ID +++ + DL E RS ILLP L ++ L++ G+ +T
Sbjct: 237 ASTTKSDEGVVYPEIDPMSK--IKFDDDLKELARS-ILLPRDMLDIEKELQKNGQPTRTN 293
Query: 575 AAKRRS 592
AAKRR+
Sbjct: 294 AAKRRA 299
>07_01_0375 - 2790287-2790675,2790843-2793783
Length = 1109
Score = 29.5 bits (63), Expect = 3.4
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Frame = -2
Query: 671 TARLWHSCGLLG-LAITSCAMSAMRLASCAVSRRAFSQSCR-AVSASRRATIISLATK*A 498
TA H L G L+ CA+ RLA VS+ A + + ++A R ++ L+T
Sbjct: 78 TAVTLHGLNLHGELSAAVCALP--RLAVLNVSKNALAGALPPGLAACRALEVLDLSTNSL 135
Query: 497 IGWLPPNLRWPPSIFASDRQFWQ*HHLYPFQRPARTCPCIALEE 366
G +PP+L PS+ RQ + + + PA ALEE
Sbjct: 136 HGGIPPSLCSLPSL----RQLFLSENFLSGEIPAAIGNLTALEE 175
>11_01_0605 + 4821363-4823246
Length = 627
Score = 29.1 bits (62), Expect = 4.5
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +1
Query: 637 PSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGF*RRIFSSDYVPNSMNVLNKV 813
PS+ L SL D+GNNE + P L+RL + + S VP+S+ L ++
Sbjct: 480 PSSISLLQSLITIDLGNNELIGIIPTNIGTFLKLERLDL-SKNYLSGQVPSSVANLERL 537
>09_03_0090 + 12292125-12292427,12293848-12294608,12295170-12295668
Length = 520
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -1
Query: 594 QLRRFAARVFAILPSRFSVASSHNHFVGNKMSDRLA 487
+L F + +L + F++ASS +G KM DRLA
Sbjct: 260 ELMGFTHEMTGLLTTSFALASSLGGLLGGKMGDRLA 295
>04_01_0157 + 1795597-1795791,1796254-1796280
Length = 73
Score = 28.7 bits (61), Expect = 6.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 565 RNLAEPFQRRVEPQSFRWQQNERSVGF 485
R+LA+P R++P+ W + +VGF
Sbjct: 45 RSLADPLMHRLQPRGPEWTPKDLTVGF 71
>03_02_0982 +
12925861-12926211,12926309-12926378,12927190-12927287,
12927467-12927615,12928083-12928198,12928521-12928617,
12929122-12929206,12929303-12929365,12929505-12929645
Length = 389
Score = 28.7 bits (61), Expect = 6.0
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = -1
Query: 561 ILPSRFSVASSHNHFVGNKMSDRLASAKSALATVNFCVRSSILAITSFVSISTAGAYLPV 382
++PSR V SH+H G ++ + L V + A+T ++S STA A
Sbjct: 52 LVPSRGHVGHSHHHHHGEEVGGEASERIFRLGLAADVVLTVGKAVTGYLSGSTAIAADAA 111
Query: 381 HS 376
HS
Sbjct: 112 HS 113
>09_04_0247 +
16030543-16031324,16032812-16033088,16033374-16033559,
16033714-16033866,16034277-16034702,16035922-16037668,
16037687-16038183,16038519-16038709,16038786-16038941,
16040077-16040311,16040416-16040723,16041279-16041439,
16041852-16041895,16041975-16042067
Length = 1751
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = -1
Query: 504 MSDRLASAKSALATVNFCVRSSILAITSFVSISTAGAYL 388
+SD LAS S+LA V +++ A+ S S S++ +Y+
Sbjct: 49 LSDLLASIPSSLALVGPAAAAAVAAVASSFSSSSSSSYV 87
>07_01_0332 - 2345980-2346566,2346715-2348262,2349214-2350279
Length = 1066
Score = 28.3 bits (60), Expect = 7.9
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = +1
Query: 637 PSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGF*RRIFSSDYVPNSMNVL 804
PSN SL D+ NN F+ P RSL+ L R FS +P+S++ L
Sbjct: 112 PSNVGSLKSLKFMDISNNRFSGPIPDNIGNLRSLQNLSLARNNFSGP-LPDSIDGL 166
>02_05_0612 + 30348495-30348995,30349679-30350023
Length = 281
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -2
Query: 713 CGRRNANSLLPTSHTARLWHSCGLLGLAITSCAMSAMRLASCAVSRRA 570
C R NA R W + +L +A+ + M A LA C+V R+
Sbjct: 231 CFRCNACKASALDTVRRNWRAVAVLNVAVLAILMLAYSLACCSVRDRS 278
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,170,601
Number of Sequences: 37544
Number of extensions: 560416
Number of successful extensions: 1831
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1830
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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