Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120257.Seq
         (828 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_962| Best HMM Match : RVT_1 (HMM E-Value=2.5e-36)                   31   1.1  
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  
SB_37158| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_10704| Best HMM Match : LMP (HMM E-Value=1.2)                       29   4.6  
SB_45790| Best HMM Match : SERTA (HMM E-Value=2.8e-07)                 29   4.6  
SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              29   6.1  
SB_6484| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.0  

>SB_962| Best HMM Match : RVT_1 (HMM E-Value=2.5e-36)
          Length = 1195

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +3

Query: 150  AIRVHVDGKYKSTFEHADQIQHHAPDSVAKQGDPLICTHTQCSLPNLA*FN 302
            A+R+HV G  K     + Q+  HAP + A     L+C  T C   N   FN
Sbjct: 1107 ALRLHVTGVTKLLLPLSRQLASHAPSATASVHRTLVCVAT-CVSTNKMRFN 1156


>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +1

Query: 484  GSQPIAHFVANEMIVARRDAETARQDCENARRETAQLANRMADIAQDVIAKPSNPQLC 657
            G  P +   A+ ++V R DAE   +     RR     +N    I  ++ +K +NP LC
Sbjct: 3352 GVSPNSVEEASSLVVVREDAEPVAR---RRRRRAVDTSNTTTPITTNLTSKVTNPSLC 3406


>SB_37158| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1421

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 200 RPNPAPCSR*RGKAGRPADLHPHTVLITKSGVIQLIMKSKL 322
           RP+  PC R          LH  ++L+TK G ++++   K+
Sbjct: 125 RPSSLPCGRCLSDRDASKFLHTTSILLTKKGSLKIVFNEKI 165


>SB_10704| Best HMM Match : LMP (HMM E-Value=1.2)
          Length = 208

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +1

Query: 508 VANEMIVARRDAETARQDCENARRETAQLANRMADIAQDVIAKPSNPQLCHSLAVCDVGN 687
           VAN++   R D      D +N R   +++AN +AD   D I++ +N    +   +  V N
Sbjct: 110 VANDLADNRPDISQVANDLDNNRPHKSRVANDLADNRSD-ISQVANDLADNRPDISQVSN 168

Query: 688 N 690
           N
Sbjct: 169 N 169


>SB_45790| Best HMM Match : SERTA (HMM E-Value=2.8e-07)
          Length = 1213

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 653 SCG-LLGLAITSCAMSAMRLASCAVSRRAFSQSCRAVS 543
           SC  LLGL ++    SAM +  C +S R   Q CR +S
Sbjct: 465 SCSSLLGLELSDELESAMWICPCTISIRTGMQRCRWIS 502


>SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 834

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
 Frame = +2

Query: 236 KAGRPADLHPHTVLITKSGVIQLIMKSKLPYAIELQEWL-LEEVIP-QVLC-TGKYAPAV 406
           K+  P   HP TVLI    +I L + + L   I LQ  L L+ +IP QVL      AP  
Sbjct: 325 KSSPPTSTHPSTVLIPLQVLIPLQVLTPLQVLIPLQVLLPLQVLIPLQVLIPLHVLAPLQ 384

Query: 407 EMDTNDVIAKIDDLT 451
            + T  V+  +  LT
Sbjct: 385 VVITLQVLTSLQVLT 399


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +2

Query: 392  YAPAVEMDTNDVIAKIDDLTQKLTVANADLAEANRSLILLPTK*LWLDATLKRL 553
            Y  AV  D +++ + I  L  KL    +DLA +NR   +L  +  W D  +K L
Sbjct: 2030 YKKAVR-DKDNMDSDIAGLRAKLNKVESDLANSNRDKNVLEGQGAWKDKRIKEL 2082


>SB_6484| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 741

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 442 RSDAKIDGGQRRFGGSQPIAHFVANEMIVARRDAETARQDCENARR 579
           R D K+D  +      Q +A  +  + I  R+D ++  +DCEN  R
Sbjct: 2   RDDEKVDPAEALLEAQQELAT-LQRQYICLRKDKKSYTEDCENVIR 46


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,860,983
Number of Sequences: 59808
Number of extensions: 596985
Number of successful extensions: 1543
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1539
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)