Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120257.Seq
         (828 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.       30   2.3  
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated...    30   2.3  
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated...    30   2.3  
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated...    30   2.3  
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated...    30   2.3  
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated...    30   2.3  
AF026215-4|AAB71322.1|  843|Caenorhabditis elegans Hypothetical ...    28   7.1  
U88311-6|AAB42347.1|  382|Caenorhabditis elegans Hypothetical pr...    28   9.4  

>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
          Length = 6632

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 395  APAVEMDTNDVIAKIDDLTQKLTVANADLAEA 490
            A  +    N +I KIDD T +L + +ADL +A
Sbjct: 4816 ANVISAGANAIIEKIDDTTYRLIIPSADLKDA 4847


>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
            protein 89, isoform e protein.
          Length = 5992

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 395  APAVEMDTNDVIAKIDDLTQKLTVANADLAEA 490
            A  +    N +I KIDD T +L + +ADL +A
Sbjct: 4176 ANVISAGANAIIEKIDDTTYRLIIPSADLKDA 4207


>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
            protein 89, isoform a protein.
          Length = 6632

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 395  APAVEMDTNDVIAKIDDLTQKLTVANADLAEA 490
            A  +    N +I KIDD T +L + +ADL +A
Sbjct: 4816 ANVISAGANAIIEKIDDTTYRLIIPSADLKDA 4847


>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
            protein 89, isoform g protein.
          Length = 7122

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 395  APAVEMDTNDVIAKIDDLTQKLTVANADLAEA 490
            A  +    N +I KIDD T +L + +ADL +A
Sbjct: 4816 ANVISAGANAIIEKIDDTTYRLIIPSADLKDA 4847


>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
            protein 89, isoform f protein.
          Length = 7441

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 395  APAVEMDTNDVIAKIDDLTQKLTVANADLAEA 490
            A  +    N +I KIDD T +L + +ADL +A
Sbjct: 4176 ANVISAGANAIIEKIDDTTYRLIIPSADLKDA 4207


>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
            protein 89, isoform b protein.
          Length = 8081

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 395  APAVEMDTNDVIAKIDDLTQKLTVANADLAEA 490
            A  +    N +I KIDD T +L + +ADL +A
Sbjct: 4816 ANVISAGANAIIEKIDDTTYRLIIPSADLKDA 4847


>AF026215-4|AAB71322.1|  843|Caenorhabditis elegans Hypothetical
           protein F09G2.4 protein.
          Length = 843

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 20/41 (48%), Positives = 22/41 (53%)
 Frame = +1

Query: 529 ARRDAETARQDCENARRETAQLANRMADIAQDVIAKPSNPQ 651
           A RDAE  R   E ARR+ AQ AN   D   D IA P  P+
Sbjct: 410 AERDAEETRLRMERARRQ-AQ-ANESDDSDDDDIAAPIVPR 448


>U88311-6|AAB42347.1|  382|Caenorhabditis elegans Hypothetical
           protein C10H11.8 protein.
          Length = 382

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 181 NRRLSMPTKSSTMLQIAWQSRATR*FAPTHSAHYQIW 291
           NR LS P   ST+  I   +  T  F  T+SAH  +W
Sbjct: 159 NRLLSFP--GSTVTSIVPNTHQTHLFVSTNSAHVWVW 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,463,376
Number of Sequences: 27780
Number of extensions: 435042
Number of successful extensions: 1156
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)