Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120257.Seq
         (828 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19390.2 68418.m02311 pleckstrin homology (PH) domain-contain...    29   5.0  
At5g19390.1 68418.m02310 pleckstrin homology (PH) domain-contain...    29   5.0  
At3g24660.1 68416.m03096 leucine-rich repeat transmembrane prote...    28   6.6  
At5g35695.1 68418.m04268 hypothetical protein                          28   8.7  
At4g30920.1 68417.m04390 cytosol aminopeptidase family protein c...    28   8.7  
At1g63540.1 68414.m07183 hydroxyproline-rich glycoprotein family...    28   8.7  

>At5g19390.2 68418.m02311 pleckstrin homology (PH) domain-containing
           protein / RhoGAP domain-containing protein weak
           similarity to rho-GTPase activating protein [Homo
           sapiens] GI:14245732; contains Pfam profiles PF00169: PH
           domain, PF00620: RhoGAP domain
          Length = 870

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +3

Query: 18  QVKIGEFKFGEDTFTLRYVLGDEQPVRFVAKDIASSLKYVNCERAIR 158
           Q   G F    DT   +Y+       RF+ +D  S+L YVN ER  R
Sbjct: 691 QTHFGSFSDARDTH--QYLQNHNPQKRFLQQDFDSTLAYVNHERKQR 735


>At5g19390.1 68418.m02310 pleckstrin homology (PH) domain-containing
           protein / RhoGAP domain-containing protein weak
           similarity to rho-GTPase activating protein [Homo
           sapiens] GI:14245732; contains Pfam profiles PF00169: PH
           domain, PF00620: RhoGAP domain
          Length = 822

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +3

Query: 18  QVKIGEFKFGEDTFTLRYVLGDEQPVRFVAKDIASSLKYVNCERAIR 158
           Q   G F    DT   +Y+       RF+ +D  S+L YVN ER  R
Sbjct: 691 QTHFGSFSDARDTH--QYLQNHNPQKRFLQQDFDSTLAYVNHERKQR 735


>At3g24660.1 68416.m03096 leucine-rich repeat transmembrane protein
           kinase, putative identical to putative kinase-like
           protein TMKL1 precursor GB:P33543 from [Arabidopsis
           thaliana], (Plant Mol. Biol. 23 (2), 415-421 (1993))
          Length = 674

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +1

Query: 625 VIAKPSNPQ-LCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGF*RRIFSSDYVPNSMNV 801
           V+ +P+ P   C +L V D+G N+F+   P+  +  + +K L     +F    VP  + V
Sbjct: 187 VLPEPALPNSTCGNLQVLDLGGNKFSGEFPEFITRFKGVKSLDLSSNVFEG-LVPEGLGV 245

Query: 802 L 804
           L
Sbjct: 246 L 246


>At5g35695.1 68418.m04268 hypothetical protein
          Length = 211

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -1

Query: 627 HVLRNVRHAVGQLRRFAARVFAILPSRFSVASSHNHFVGNKMS 499
           H L N+RH    LR    R+F I  SRF++  S   F   K +
Sbjct: 87  HELFNLRHV--SLRNVIERIFGIFKSRFAIFKSAPPFSYKKQA 127


>At4g30920.1 68417.m04390 cytosol aminopeptidase family protein
           contains Pfam profiles: PF00883 cytosol aminopeptidase
           family catalytic domain, PF02789: cytosol aminopeptidase
           family N-terminal domain
          Length = 583

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = -1

Query: 543 SVASSHNHFVGNKMSDRLASAKSALATVNFCVRSSI-LAITSFVSISTAGAYLPVHST*G 367
           S ASS + F     S   +S  S      F  R  +  A+T   S S A A+   H+T G
Sbjct: 8   SFASSSSRFHFRSFSSSPSSLSSCFVRFQFPSRLRLAFAVTPLYSSSRAMAHTISHATLG 67

Query: 366 MTSSKS 349
           +T + S
Sbjct: 68  LTQANS 73


>At1g63540.1 68414.m07183 hydroxyproline-rich glycoprotein family
           protein
          Length = 635

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = -2

Query: 722 DRFCGRRNANSLLPTSHTARLWHSCGLLGLAITSCAMSAMRLASCAVSRRAFSQSCRAVS 543
           DRF    +A S   +S T+  +HS  LLG A    ++S+    +C  + +AF Q  +A  
Sbjct: 175 DRFATSSSA-SATSSSSTSSPFHSSSLLGFAPAVTSVSSAPTPACGPT-QAFGQPTQAFG 232

Query: 542 AS 537
            S
Sbjct: 233 LS 234


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,484,695
Number of Sequences: 28952
Number of extensions: 404418
Number of successful extensions: 1048
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1902108000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)