Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120255.Seq
         (864 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p...    27   3.4  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    27   3.4  
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p...    27   3.4  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    27   4.5  
SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces po...    26   6.0  
SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schiz...    26   6.0  
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce...    26   7.9  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    26   7.9  
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa...    26   7.9  

>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 335

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 341 YINLVISSVY*TLSRLLTTPFFVNST 264
           YIN V   +  TL+ LLT PF V+ T
Sbjct: 247 YINFVSGGISGTLATLLTQPFDVSKT 272


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -1

Query: 159 VLRESISS-TTLEKCFSIDSYMTTSIDFISCSSLFKCPAYTK*PTKQ 22
           + ++S+SS TTL K  S  SY+ T+ + +  +S FK    T  P  +
Sbjct: 544 IQQKSVSSETTLVKPSSTSSYIDTTNNVLKTNSSFKSSGLTSGPRNE 590


>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 521

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
 Frame = -3

Query: 223 YNCVPRSNRVILQVAQHHKRVRFKRINFVYHIGKMFF----HRFVHDH 92
           Y  V R+ R++  V  H         N +YH GK++F        HDH
Sbjct: 269 YQLVARNMRILFHVC-HLVHADLSEYNLLYHKGKVYFIDVSQSVEHDH 315


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1258

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 314  Y*TLSRLLTTPFFVNSTLIFRRDWIFFCHFLQLRPTFES 198
            Y  LS+L+   F+ N  L   + W  FC+    +  FES
Sbjct: 960  YQRLSKLILYSFYKNIALYMTQFWYAFCNAFSGQVIFES 998


>SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 192

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +1

Query: 427 RHGLH-LSKFKNAFASVSTTFVHHPI 501
           R GL   SKF  AFAS+S+ F+H+ +
Sbjct: 39  RSGLSKFSKFVYAFASISSGFLHYQL 64


>SPAC4D7.05 |sum1|tif34|translation initiation factor
           eIF3i|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +2

Query: 146 DSLKTDTFMMLSNLQNNTIRTWDAVVKNGKKI 241
           D  K+ T +M+S   +NT+R WD  VK GK++
Sbjct: 59  DINKSST-LMVSGAADNTMRLWD--VKTGKQL 87


>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 393

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/40 (22%), Positives = 22/40 (55%)
 Frame = +2

Query: 101 YESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAV 220
           Y +  +++ +++D  +S   D     S+  NN++ TW+ +
Sbjct: 290 YTTFAEYYMDLLDNSESNVDDLINKASSWLNNSVDTWNVI 329


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -3

Query: 232 AIFYNCVPRSNRVILQVAQHHKRVRFKRI 146
           A+  + VPR  RVI QV+Q   R R K+I
Sbjct: 4   AVEKDAVPRKRRVISQVSQACIRCRQKKI 32


>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
           Swd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 357

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = +2

Query: 134 VDEIDSLKTDTFMMLSNLQNNTIRTWDAVVKNGKKISNLDEKLTCY*QKTG*LTTCLTFN 313
           V  ID    D   + ++L +NTIR WD    N + + N+   +      TG +   ++  
Sbjct: 115 VTSIDVSPADETFLSASL-DNTIRLWDLRSPNCQGLLNVSSPVVAAFDATGLIFASVSER 173

Query: 314 KRYLSL 331
           K  +SL
Sbjct: 174 KYKISL 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,403,277
Number of Sequences: 5004
Number of extensions: 67637
Number of successful extensions: 212
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)