Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120255.Seq
(864 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0496 + 18079905-18081586,18084825-18084868,18086396-180865... 33 0.22
04_04_1312 + 32565447-32565585,32566008-32566060,32566139-325667... 33 0.29
04_04_1311 - 32559549-32559674,32559761-32560078,32560158-325602... 33 0.39
11_01_0559 - 4406815-4406922,4408954-4409042,4409177-4409270,440... 31 1.6
12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,398... 30 2.7
01_06_0708 + 31363851-31364063,31364314-31364439,31364646-31365755 30 2.7
08_01_0205 - 1642769-1642783,1642923-1643555,1643656-1643737,164... 29 6.3
06_03_0016 - 15444543-15444901,15445091-15445113,15445205-154456... 29 6.3
>09_04_0496 +
18079905-18081586,18084825-18084868,18086396-18086502,
18087069-18087674,18087789-18088013,18088102-18088167,
18088268-18088336,18088511-18088582,18088672-18088848,
18089978-18090115
Length = 1061
Score = 33.5 bits (73), Expect = 0.22
Identities = 22/56 (39%), Positives = 27/56 (48%)
Frame = +1
Query: 436 LHLSKFKNAFASVSTTFVHHPI*T*KMINDAGGSCHNTVKYMVDIYGASVLILRTP 603
LH K AF +ST PI K + G CHN VK + IYG + L+L P
Sbjct: 516 LHSEKLAIAFGLISTA-PGTPIRIAKNLRVCG-DCHNAVKLLSKIYGRNPLLLLAP 569
>04_04_1312 +
32565447-32565585,32566008-32566060,32566139-32566771,
32566844-32566972,32567052-32567144,32567220-32567336,
32567412-32567512,32567603-32567870,32568236-32568265,
32568361-32568572,32568650-32568731,32568804-32569555,
32569640-32569811,32570412-32570498,32570578-32570895,
32570982-32571107
Length = 1103
Score = 33.1 bits (72), Expect = 0.29
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -1
Query: 204 RIVLFCKLLNIINVSVLRESISSTTLEKCFSIDSYMTTSIDFISCS 67
R + +L I +++L +S +CF YM TSI FI C+
Sbjct: 422 RSMFSTELKTKIKINILDHEVSERNYVECFKQQGYMNTSIMFIQCA 467
>04_04_1311 -
32559549-32559674,32559761-32560078,32560158-32560244,
32560845-32561016,32561101-32561852,32561925-32562006,
32562084-32562295,32562391-32562420,32562786-32563074,
32563143-32563243,32563319-32563435,32563511-32563603,
32563683-32563811,32563884-32564516,32564765-32564844,
32565152-32565164
Length = 1077
Score = 32.7 bits (71), Expect = 0.39
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 171 INVSVLRESISSTTLEKCFSIDSYMTTSIDFISCS 67
I +++L +S +CF YM TSI FI C+
Sbjct: 407 IKINILDHEVSERNYVECFKQQGYMNTSIMFIQCA 441
>11_01_0559 -
4406815-4406922,4408954-4409042,4409177-4409270,
4409344-4409481,4409570-4409727,4409826-4409916,
4410003-4411637
Length = 770
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +2
Query: 107 SMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAVVKNGKKISNLDEKLTC 268
S+E H +V+D S+ + ++LS+ + T+R WD K K+ ++ +TC
Sbjct: 527 SLEGHLDDVLDLAWSMYSQ--LLLSSSMDKTVRLWDTEAKACLKLFPHNDYVTC 578
>12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,
3983250-3983301,3983497-3983654,3983756-3985617,
3986029-3986093,3986176-3986340,3986836-3986893,
3987479-3987590,3987661-3987712,3988080-3988140,
3988220-3988377,3988705-3988787,3988897-3988945,
3989122-3989185,3990225-3990317,3990410-3990543,
3991364-3991585,3991815-3991937,3992103-3992267,
3993064-3993450
Length = 1479
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +2
Query: 110 MEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAVVKNGKKISNLDEKLTC 268
+E H +V+D S KTD +LS+ + T+R WD K K+ ++ +TC
Sbjct: 1238 LEGHQDDVLDLTWS-KTD--QLLSSSMDKTVRLWDTTTKACLKVFAHNDYVTC 1287
>01_06_0708 + 31363851-31364063,31364314-31364439,31364646-31365755
Length = 482
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +2
Query: 137 DEIDSLKTDTFMMLSNLQNNTIRTWDAVVKNGKKISNLDEKL 262
+EI+ LK+D + S LQNNT++ + K++ L+EKL
Sbjct: 170 EEIERLKSDNAALSSELQNNTLKK----LNMEKRMQALEEKL 207
>08_01_0205 -
1642769-1642783,1642923-1643555,1643656-1643737,
1644474-1644514
Length = 256
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 645 VCNKCAQQLVGKRARRSQNQNGRSVNVHHVFDRVMTRSARIVDHFSC 505
+C+ A QL GK+ S ++ SV + + F ++ TR I D C
Sbjct: 196 ICSGIAAQLFGKKNELSNQESVASVTIPYSFPKLWTR-VEIDDAMMC 241
>06_03_0016 -
15444543-15444901,15445091-15445113,15445205-15445618,
15445707-15445726
Length = 271
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/49 (36%), Positives = 22/49 (44%)
Frame = +2
Query: 686 HARDHVLLTADLVRDLGPGLDRGHVHVSQARTATNIRRAGKNSSSKRHV 832
H R L+A LGP R H V ++ TAT I A K S + V
Sbjct: 30 HCRVVAQLSALPPMSLGPAHPRSHPVVPRSTTATRIPEASKTSGKGKDV 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,965,831
Number of Sequences: 37544
Number of extensions: 397092
Number of successful extensions: 1058
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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